View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11204_high_3 (Length: 529)
Name: NF11204_high_3
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11204_high_3 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 50556730 - 50556211
Alignment:
| Q |
14 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
113 |
Q |
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| T |
50556730 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
50556631 |
T |
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| Q |
114 |
gtgatggatatatagatgcaatggagttgaagagagtgcttgattgcttgggtttggataaaggtcgagtgagatgaatactattgaaaggatggttaag |
213 |
Q |
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| T |
50556630 |
gcgatggatatatagatgcaatggagttgaagagagtgcttgattgcttgggtttggataaaggttggg--atatgaatacaattgaaaggatggttaag |
50556533 |
T |
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| Q |
214 |
gttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttcattccttgattttagaatg |
313 |
Q |
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| T |
50556532 |
gttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttcattccttgattttagaatg |
50556433 |
T |
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| Q |
314 |
taataataattattgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtataattctatgatgaaaatgaattat |
413 |
Q |
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| T |
50556432 |
taataataattattgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtataattctatgatgaaaatgaattat |
50556333 |
T |
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| Q |
414 |
gaa------gnnnnnnnnnnnnngcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccatttagtatatatgtcatacatgatttt |
507 |
Q |
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| T |
50556332 |
gaagtttttgttttttgttttttgcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccatttagtatatatgtcatacatgatttt |
50556233 |
T |
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| Q |
508 |
ttggttttaacaatctggttcc |
529 |
Q |
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| T |
50556232 |
ttggttttaacaatctggttcc |
50556211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 50857620 - 50857907
Alignment:
| Q |
14 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
113 |
Q |
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| T |
50857620 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
50857719 |
T |
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| Q |
114 |
gtgatggatatatagatgcaatggagttgaagagagtgcttgattgcttgggtttggataaaggtcgagtgagatgaatactattgaaaggatggttaag |
213 |
Q |
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| T |
50857720 |
gtgatggatatatagatgcaatggagttgaagagagtgcttgattgcttgggtttggataaaggt--tgggatatgaatacaattgaaaggatggttaag |
50857817 |
T |
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| Q |
214 |
gttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttcattccttga |
303 |
Q |
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| T |
50857818 |
gttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtctgttcattccttga |
50857907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 50818244 - 50817957
Alignment:
| Q |
14 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
113 |
Q |
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| T |
50818244 |
gaagaagaagtggttgttgaagaggtgcttggtgaattggaagatatgtcaaagagaagtgagttattgcttgaagctttcaaaatatttgatgaggatg |
50818145 |
T |
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| Q |
114 |
gtgatggatatatagatgcaatggagttgaagagagtgcttgattgcttgggtttggataaaggtcgagtgagatgaatactattgaaaggatggttaag |
213 |
Q |
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| T |
50818144 |
gtgatggatatatagatgcaatggagttgaagagagtgcctgattgcttgggtttggataaaggt--tgggatatgaatacaattgaaaggatggttaag |
50818047 |
T |
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| Q |
214 |
gttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtttgttcattccttga |
303 |
Q |
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| T |
50818046 |
gttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtctgttcattccttga |
50817957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 50817921 - 50817877
Alignment:
| Q |
458 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
502 |
Q |
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| T |
50817921 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50817877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 50857943 - 50857987
Alignment:
| Q |
458 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
502 |
Q |
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| T |
50857943 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50857987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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