View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11204_high_4 (Length: 386)

Name: NF11204_high_4
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11204_high_4
NF11204_high_4
[»] chr4 (11 HSPs)
chr4 (201-380)||(4623280-4623459)
chr4 (14-130)||(4623085-4623201)
chr4 (223-371)||(4598799-4598947)
chr4 (9-118)||(4598564-4598673)
chr4 (236-327)||(25037315-25037406)
chr4 (236-329)||(25016032-25016125)
chr4 (65-125)||(25015853-25015913)
chr4 (21-125)||(25037089-25037193)
chr4 (247-291)||(25002270-25002314)
chr4 (247-329)||(25044895-25044977)
chr4 (259-343)||(25187560-25187644)
[»] chr2 (2 HSPs)
chr2 (201-380)||(18805544-18805723)
chr2 (22-130)||(18805793-18805901)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 201 - 380
Target Start/End: Original strand, 4623280 - 4623459
Alignment:
Q  201 tgattctgatttaagtaaatagagggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623280 tgattctgatttaagtaaatagagggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgc 4623379  T
Q  301 ctcttccagtgatagcgttggatcattgacttcattcatacctatgatttaaatttattagaattttcaaattttagttt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4623380 ctcttccagtgatagcgttggatcattgacttcattcatacctatgatttaaatttattagaattttcaaattttagttt 4623459  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 4623085 - 4623201
Alignment:
Q  14 attctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattccaagttgtccaaaagggaccatgcaaaatacccttgtaccttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  4623085 attctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattcaaagttgtccaaaagggaccatgcaaaatatccttgtaccttc 4623184  T
Q  114 acaccttgccttcacac 130  Q
    |||||||||||||||||    
T  4623185 acaccttgccttcacac 4623201  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 223 - 371
Target Start/End: Original strand, 4598799 - 4598947
Alignment:
Q  223 agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga 322  Q
    |||||||||||| ||||||||  ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||| ||||||| |    
T  4598799 agggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtgacagcgttgaa 4598898  T
Q  323 tcattgacttcattcatacctatgatttaaatttattagaattttcaaa 371  Q
    |||||| | || |||||||||||||||||||||||||||||||||||||    
T  4598899 tcattgtcctcgttcatacctatgatttaaatttattagaattttcaaa 4598947  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 4598564 - 4598673
Alignment:
Q  9 agattattctcataatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattccaagttgtccaaaagggaccatgcaaaatacccttgta 108  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |    
T  4598564 agatcattctcataatcaacaaagttaattccaaaacgcacggtgtatccgtcactccattcaaagttgtccaaaagggaccatgcaaaatatccttgca 4598663  T
Q  109 ccttcacacc 118  Q
    | ||||||||    
T  4598664 cattcacacc 4598673  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 327
Target Start/End: Original strand, 25037315 - 25037406
Alignment:
Q  236 attgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttggatcatt 327  Q
    ||||||||| ||| |||||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  25037315 attgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatt 25037406  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 25016032 - 25016125
Alignment:
Q  236 attgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttggatcattga 329  Q
    ||||||||| ||| |||||| ||||| |||||||||||||||||||||| ||||||||| || || ||||| |||||||| |||||||||||||    
T  25016032 attgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattga 25016125  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 25015853 - 25015913
Alignment:
Q  65 ccattccaagttgtccaaaagggaccatgcaaaatacccttgtaccttcacaccttgcctt 125  Q
    |||||| |||||||||||||| |||||||||||||| |||||||| |||||||| ||||||    
T  25015853 ccattcaaagttgtccaaaagtgaccatgcaaaatatccttgtactttcacaccatgcctt 25015913  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 25037089 - 25037193
Alignment:
Q  21 taatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattccaagttgtccaaaagggaccatgcaaaatacccttgtaccttcacacctt 120  Q
    ||||| ||||||||||||||||||||     |||||||| |   |||||| |||||||| ||||| |||||||||||||| |||||||| |||||||| |    
T  25037089 taatctacaaagttaattccaaaacgtcttctgtatccggccagccattcaaagttgtctaaaagtgaccatgcaaaatatccttgtactttcacaccat 25037188  T
Q  121 gcctt 125  Q
    |||||    
T  25037189 gcctt 25037193  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 25002314 - 25002270
Alignment:
Q  247 aagataatatagatgacgataaaagtaatcaattctgttagtatc 291  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  25002314 aagataataaagatgacgataaaagtaatcaattctgtcagtatc 25002270  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 25044895 - 25044977
Alignment:
Q  247 aagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttggatcattga 329  Q
    ||||||||| |||||||||||||||||||||||||||  |||||| || || |  ||||| || || || |||||||||||||    
T  25044895 aagataataaagatgacgataaaagtaatcaattctgagagtatctataagggattcttcaagcgacagtgttggatcattga 25044977  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 25187560 - 25187644
Alignment:
Q  259 atgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttggatcattgacttcattcatacct 343  Q
    |||||| ||| ||||||||||||||| ||||||||  ||||| ||||| |  || || |||| ||| |||| |||||||||||||    
T  25187560 atgacggtaatagtaatcaattctgtaagtatccaaaagtgcttcttctacagaaagtgttgcatcgttgaattcattcatacct 25187644  T

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Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 201 - 380
Target Start/End: Complemental strand, 18805723 - 18805544
Alignment:
Q  201 tgattctgatttaagtaaatagagggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgc 300  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||  ||  ||||| ||||||||||||  |||||||||||| | | |||||||||| |     
T  18805723 tgattcttatttaagtaaagagagggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgt 18805624  T
Q  301 ctcttccagtgatagcgttggatcattgacttcattcatacctatgatttaaatttattagaattttcaaattttagttt 380  Q
    |||||| |||||||| |||||||||| |   ||||| | ||||||||||||||||||||||| |||||||||||||||||    
T  18805623 ctcttcgagtgatagggttggatcatcgtactcatttaaacctatgatttaaatttattagagttttcaaattttagttt 18805544  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 18805901 - 18805793
Alignment:
Q  22 aatcaacaaagttaattccaaaacgcacagtgtatccgtcattccattccaagttgtccaaaagggaccatgcaaaatacccttgtaccttcacaccttg 121  Q
    ||||||||||||||||||||||||| |  ||||||||||| | |||||| || ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  18805901 aatcaacaaagttaattccaaaacgtaaggtgtatccgtcttgccattcaaaattgtcgaaaagggaccatgcaaaatatccttgtacattcacaccttg 18805802  T
Q  122 ccttcacac 130  Q
    |||||||||    
T  18805801 ccttcacac 18805793  T

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