View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11204_high_5 (Length: 365)
Name: NF11204_high_5
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11204_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 3479938 - 3480210
Alignment:
| Q |
1 |
ctagatatctaaagcgtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgtttat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3479938 |
ctagatatctaaagagtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgtttat |
3480037 |
T |
|
| Q |
101 |
aataagtcggagcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcgaaaagcaaaataacaattttta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3480038 |
aataagtcggggcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcaaaaagcaaaataacaattttta |
3480137 |
T |
|
| Q |
201 |
cctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480138 |
cctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
3480210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 3455519 - 3455606
Alignment:
| Q |
184 |
caaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
271 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3455519 |
caaaataacaatatttacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
3455606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
286 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 48694814 - 48694740
Alignment:
| Q |
197 |
tttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
271 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || | |||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
48694814 |
tttacctgatcggttacatccattcccatgtaattgattccaattgtttcacctgccttgctgaatacaggttct |
48694740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University