View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11204_high_8 (Length: 314)
Name: NF11204_high_8
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11204_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11119449 - 11119678
Alignment:
| Q |
1 |
tactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgt |
100 |
Q |
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| T |
11119449 |
tactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgt |
11119548 |
T |
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| Q |
101 |
gtgcaagataaccnnnnnnnnnnctaagtaattttc-----attatagtatatcctctctttccgtcacaagttatgtctgtgnnnnnnncaacattccc |
195 |
Q |
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| T |
11119549 |
gtgcaagataatcttttttttttctaagtaattttcattatattatagtatatcctctctttccgtcacaagttatgtctttgtttttttcaacatttcc |
11119648 |
T |
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| Q |
196 |
cattattagataatcatcctcttgcatcca |
225 |
Q |
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| T |
11119649 |
cattattagatgatcatcctcttgcatcca |
11119678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 11111694 - 11111747
Alignment:
| Q |
18 |
atgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtg |
71 |
Q |
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| T |
11111694 |
atgtggtgattggaattcactaataaagagaagtgctggctaagcacatttgtg |
11111747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
248 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
313 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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