View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11204_low_1 (Length: 482)

Name: NF11204_low_1
Description: NF11204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11204_low_1
NF11204_low_1
[»] chr2 (9 HSPs)
chr2 (16-477)||(16560945-16561408)
chr2 (98-172)||(36688897-36688971)
chr2 (130-176)||(4553083-4553129)
chr2 (106-140)||(4410833-4410867)
chr2 (98-172)||(13344499-13344573)
chr2 (98-168)||(16734802-16734872)
chr2 (99-172)||(16044359-16044432)
chr2 (107-180)||(31150660-31150733)
chr2 (99-172)||(37666652-37666725)
[»] chr8 (7 HSPs)
chr8 (98-172)||(8587185-8587259)
chr8 (98-172)||(42842867-42842941)
chr8 (99-172)||(28463626-28463699)
chr8 (133-172)||(33057670-33057709)
chr8 (98-172)||(39571244-39571318)
chr8 (103-140)||(3236385-3236422)
chr8 (98-178)||(24692020-24692099)
[»] chr3 (7 HSPs)
chr3 (98-183)||(33942973-33943058)
chr3 (98-141)||(49687917-49687960)
chr3 (98-172)||(9111535-9111609)
chr3 (98-172)||(34080071-34080145)
chr3 (98-172)||(38964407-38964481)
chr3 (100-188)||(8092587-8092675)
chr3 (144-180)||(42299652-42299688)
[»] chr1 (5 HSPs)
chr1 (98-172)||(11897069-11897143)
chr1 (98-172)||(16448149-16448223)
chr1 (98-172)||(23278042-23278116)
chr1 (98-172)||(34042711-34042785)
chr1 (99-180)||(21537911-21537992)
[»] chr4 (8 HSPs)
chr4 (98-167)||(35663934-35664003)
chr4 (100-168)||(41594673-41594741)
chr4 (103-167)||(43541893-43541956)
chr4 (98-172)||(3422076-3422149)
chr4 (98-172)||(6121934-6122008)
chr4 (98-172)||(17344228-17344302)
chr4 (98-180)||(47838658-47838740)
chr4 (106-151)||(51531507-51531552)
[»] chr5 (12 HSPs)
chr5 (98-166)||(6126845-6126913)
chr5 (98-168)||(3346934-3347004)
chr5 (98-180)||(11795175-11795257)
chr5 (128-182)||(14325869-14325923)
chr5 (98-180)||(26350391-26350473)
chr5 (100-142)||(36240264-36240306)
chr5 (98-180)||(36563579-36563661)
chr5 (103-140)||(5002196-5002233)
chr5 (133-173)||(18167333-18167373)
chr5 (128-172)||(18167390-18167434)
chr5 (128-172)||(36595789-36595833)
chr5 (144-180)||(36595858-36595894)
[»] scaffold0650 (1 HSPs)
scaffold0650 (98-164)||(26-92)
[»] chr7 (3 HSPs)
chr7 (98-172)||(4790263-4790337)
chr7 (98-172)||(7269446-7269520)
chr7 (98-172)||(7482240-7482314)
[»] chr6 (1 HSPs)
chr6 (98-172)||(13043773-13043847)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 16560945 - 16561408
Alignment:
Q  16 gttacaacaccagccccaaaaaattatgaaattttaattgtactcattttttcaagtactccattcggtcatatttatacgaaaaa-------------- 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||                  
T  16560945 gttacaacaccagccccaaaaaattatgaaattttaattgtacttattttttcaagtacttcattcagtcatatttatacgaaaaagttgagttaataaa 16561044  T
Q  102 -gttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcggaaggggtaacacataagaatc 200  Q
     |||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  16561045 agttgatgtattttgtttaaaatttagaccaaataaatcaatctttgttgatcaaactttctcttataaatatgatcggagggggtaacatataagaatc 16561144  T
Q  201 atcatttccaaagcttatgatattataatttctctcgcaaactttagcattaatgtagtaactttctttcacctcaaatccaaaattgtagtaaaaggaa 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16561145 atcatttccaaagcttatgttattataatttctctcgcaaactttagcattaatgtagtaactttccttcacctcaaatccaaaattgtagtaaaaggaa 16561244  T
Q  301 agtggggtatactacaagattacactacaagataaaagatgtactggatgagaatgaaaatctgaaagattccatgaattctttcattcaattcaatata 400  Q
    ||||||||||             ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16561245 agtggggtat-------------actacaagataaaagctgtacaggatgagaatgaaaatctgaaagattccatgaactctttcattcaattcaatata 16561331  T
Q  401 taaccgatacgacagggagaataagaatatatccaagctatggtacaaatgaatctcacaaactatttcatctcact 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  16561332 taaccgatacgacagggagaataagaatatatccaagctatggtacaaatgaatctcgcaaacaatttcatatcact 16561408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 36688971 - 36688897
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||| |||||||||||||||||||||| |||  | |||||||||  |||||||| ||||||||||||||||||||    
T  36688971 aaaaattgatgtatcttgtttaaaattcagacaagatacatcaacgtttgttgaccaaactttctcttataaata 36688897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 4553083 - 4553129
Alignment:
Q  130 caaatacatcaatctttgttgatcaaactttctcttataaatatgat 176  Q
    |||||||||| || |||||||| ||||||||||||||||||||||||    
T  4553083 caaatacatctatttttgttgaccaaactttctcttataaatatgat 4553129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 4410867 - 4410833
Alignment:
Q  106 atgtatcttgtttaaaatttagatcaaatacatca 140  Q
    |||||||||||||||||| ||||||||||||||||    
T  4410867 atgtatcttgtttaaaatatagatcaaatacatca 4410833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 13344573 - 13344499
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  || |||||||| | || |||||||||||||||    
T  13344573 aaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaata 13344499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 16734872 - 16734802
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttata 168  Q
    |||||||||||||| | ||| |||||| ||  || |||||||||  |||||||| ||||||||||||||||    
T  16734872 aaaagttgatgtatttggttaaaaattcagtccagatacatcaacttttgttgaccaaactttctcttata 16734802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 16044359 - 16044432
Alignment:
Q  99 aaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||||||||| ||| |||||| || ||||||||||  |  |||||||| | || |||||||||||||||    
T  16044359 aaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaata 16044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 31150733 - 31150660
Alignment:
Q  107 tgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    ||||||| ||| |||||||||  ||||||||| ||  ||||||||   |||||||||||||||||| |||||||    
T  31150733 tgtatctagttaaaaatttagtccaaatacataaacttttgttgacgcaactttctcttataaataggatcgga 31150660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 37666652 - 37666725
Alignment:
Q  99 aaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||||||||| ||| |||||| || ||||||||||  |  |||||||| | || |||||||||||||||    
T  37666652 aaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaata 37666725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 8587259 - 8587185
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||||||   |||||||||||  |||||||| ||||||||||||||||||||    
T  8587259 aaaagttgatgtatctagttaaaaatttagtcaaaatacatcaacttttgttgaccaaactttctcttataaata 8587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 42842867 - 42842941
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||||  ||||  || ||||||||| |||||||||||||| ||||||||||| | ||| |||||||||||    
T  42842867 aaaagttgatacatctgattcaaaatttagttcaaatacatcaatttttgttgatcagattttttcttataaata 42842941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 28463699 - 28463626
Alignment:
Q  99 aaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||| ||||| ||| |||||| ||  ||||||||||||  |||||||| | ||||||||||||||||||    
T  28463699 aaagttgatatatctggttcaaaattcagtccaaatacatcaacttttgttgacccaactttctcttataaata 28463626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 33057670 - 33057709
Alignment:
Q  133 atacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  33057670 atacatcaatttttgttgaccaaactttctcttataaata 33057709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 39571244 - 39571318
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||||| || |||||||||||||||    
T  39571244 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaata 39571318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 3236385 - 3236422
Alignment:
Q  103 ttgatgtatcttgtttaaaatttagatcaaatacatca 140  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  3236385 ttgatgtatctagtttaaaatttagaccaaatacatca 3236422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 24692020 - 24692099
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcg 178  Q
    |||||||||| ||||| ||| |||||| || ||| |||||||||  |||||||| | |||||| ||||||||||| |||||    
T  24692020 aaaagttgatatatctggtt-aaaattcagttcagatacatcaacttttgttgacctaactttttcttataaataggatcg 24692099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 33942973 - 33943058
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcggaagg 183  Q
    |||||||||||||||| ||| |||||| ||  ||||||||| ||  |||||||| | |||||||| ||||||||| ||||||||||    
T  33942973 aaaagttgatgtatctagttaaaaattcagtccaaatacattaacttttgttgacctaactttcttttataaataggatcggaagg 33943058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 49687960 - 49687917
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaa 141  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||    
T  49687960 aaaagttgatttatctagtttaaaatttagataaaatacatcaa 49687917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 9111535 - 9111609
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| || ||||||||||  |  |||||||| | || |||||||||||||||    
T  9111535 aaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaata 9111609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 34080071 - 34080145
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||||||| |||||| ||  |||||||||  |  |||||||| | || |||||||||||||||    
T  34080071 aaaagttgatgtatcttgttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaata 34080145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 38964481 - 38964407
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||||| || |||||||||||||||    
T  38964481 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaata 38964407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 8092675 - 8092587
Alignment:
Q  100 aagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcggaaggggtaa 188  Q
    |||||||||||||| ||| |||||||||   | |||||||||  || ||||||  || ||||||||||||||| || |||| |||||||    
T  8092675 aagttgatgtatctggttaaaaatttagtcgagatacatcaactttagttgattcaattttctcttataaataggaccggatggggtaa 8092587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 42299652 - 42299688
Alignment:
Q  144 tttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||| |||||||||||||||||| |||||||    
T  42299652 tttgttgatccaactttctcttataaatacgatcgga 42299688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 11897143 - 11897069
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||  ||| |||||| || ||| |||||||||  |||||||| | ||||||||||||||||||    
T  11897143 aaaagttgatgtatccggttaaaaattcagttcagatacatcaacttttgttgacctaactttctcttataaata 11897069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 16448149 - 16448223
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||| |||||||| ||| |||||| ||  || |||||||||  |||||||| | ||||||||||||||||||    
T  16448149 aaaagtttatgtatctggttcaaaattcagtccagatacatcaacttttgttgacccaactttctcttataaata 16448223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 23278042 - 23278116
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  || |||||||| | || |||||||||||||||    
T  23278042 aaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaata 23278116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 34042785 - 34042711
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  || |||||||| | || |||||||||||||||    
T  34042785 aaaagttgatgtatctagttaaaaattcagtccaaatacattcatttttgttgacctaaatttctcttataaata 34042711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 21537911 - 21537992
Alignment:
Q  99 aaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||||  || ||| ||||| ||| |||||||||  ||||||||   || ||||||||||||||| |||||||    
T  21537911 aaagttgatgtatctgattcaaattttagttcagatacatcaacttttgttgactcaattttctcttataaataagatcgga 21537992  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 35664003 - 35663934
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttat 167  Q
    |||||||||||||||| ||| ||||||| || || |||||||||| |||||| | | |||||||||||||    
T  35664003 aaaagttgatgtatctggttcaaaatttggaccagatacatcaatttttgtttacccaactttctcttat 35663934  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 41594741 - 41594673
Alignment:
Q  100 aagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttata 168  Q
    |||||||||||||| ||| ||||||| || || |||||||||  |||||||| | ||||||||||||||    
T  41594741 aagttgatgtatctggttcaaaatttggaccatatacatcaacttttgttgacccaactttctcttata 41594673  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 43541893 - 43541956
Alignment:
Q  103 ttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttat 167  Q
    ||||||||| | ||||||||||| || ||||||||||||| |||||||||| |||||| ||||||    
T  43541893 ttgatgtatttcgtttaaaatttggaccaaatacatcaat-tttgttgatccaactttatcttat 43541956  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 3422149 - 3422076
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| || ||||||||||  || |||||||| | || |||||||||||||||    
T  3422149 aaaagttgatgtatctagttaaaaattcagttcaaatacattcat-tttgttgacctaaatttctcttataaata 3422076  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 6121934 - 6122008
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||||| || |||||||||||||||    
T  6121934 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgatctaaatttctcttataaata 6122008  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 17344302 - 17344228
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||   || |||||| || ||| |||||||||  |||||||||  ||||||||||||||||||    
T  17344302 aaaagttgatgtatccgattaaaaattcagttcagatacatcaacttttgttgatttaactttctcttataaata 17344228  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 47838658 - 47838740
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||| | || ||||||||||||||| |||||||    
T  47838658 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgaccgaaatttctcttataaataggatcgga 47838740  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 51531552 - 51531507
Alignment:
Q  106 atgtatcttgtttaaaatttagatcaaatacatcaatctttgttga 151  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  51531552 atgtatcttgttcaaaatttggaccaaatacatcaatttttgttga 51531507  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 6126913 - 6126845
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctctta 166  Q
    |||||||||||||||| ||| |||||||||  |||||||||  || |||||||||| || |||||||||    
T  6126913 aaaagttgatgtatctagttaaaaatttagtccaaatacattcatttttgttgatctaaatttctctta 6126845  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 3346934 - 3347004
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttata 168  Q
    ||||||||||||| || ||||||||||| ||||| |||||||||| ||| || | | || |||||||||||    
T  3346934 aaaagttgatgtacctagtttaaaatttggatcagatacatcaatttttattaacctaattttctcttata 3347004  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 11795257 - 11795175
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||| | || ||||||||||||||| |||||||    
T  11795257 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcgga 11795175  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 14325923 - 14325869
Alignment:
Q  128 atcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcggaag 182  Q
    ||||||||||| ||| ||||||||||||| ||| |||||||||||  ||||||||    
T  14325923 atcaaatacattaatttttgttgatcaaattttttcttataaatagaatcggaag 14325869  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 26350391 - 26350473
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||| | || ||||||||||||||| |||||||    
T  26350391 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcgga 26350473  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 36240306 - 36240264
Alignment:
Q  100 aagttgatgtatcttgtttaaaatttagatcaaatacatcaat 142  Q
    |||||||||||| |||||| |||||| ||||||||||||||||    
T  36240306 aagttgatgtattttgtttgaaatttggatcaaatacatcaat 36240264  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 36563579 - 36563661
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||||| ||| |||||| ||  |||||||||  |  |||||||| | || ||||||||||||||| |||||||    
T  36563579 aaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgacctaaatttctcttataaataggatcgga 36563661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 5002233 - 5002196
Alignment:
Q  103 ttgatgtatcttgtttaaaatttagatcaaatacatca 140  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  5002233 ttgatgtatcttgtctaaaatatagatcaaatacatca 5002196  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 18167373 - 18167333
Alignment:
Q  133 atacatcaatctttgttgatcaaactttctcttataaatat 173  Q
    |||||||||| |||||||||| ||||||||||||| |||||    
T  18167373 atacatcaatttttgttgatctaactttctcttattaatat 18167333  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 18167390 - 18167434
Alignment:
Q  128 atcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||| ||||| |||||||| |||||||| |||||||||||    
T  18167390 atcaaatacgtcaatttttgttgaccaaactttttcttataaata 18167434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 36595833 - 36595789
Alignment:
Q  128 atcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||| |||||||||| |||||||| | ||||||||||||||||||    
T  36595833 atcagatacatcaatttttgttgacctaactttctcttataaata 36595789  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 36595858 - 36595894
Alignment:
Q  144 tttgttgatcaaactttctcttataaatatgatcgga 180  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36595858 tttgttgatcaaatattctcttataaatatgatcgga 36595894  T

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Target: scaffold0650 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 26 - 92
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctct 164  Q
    |||||||||||||| | ||| |||||||||  ||||||||||||  |||||||| ||| ||||||||    
T  26 aaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaatctttctct 92  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 4790337 - 4790263
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||||||  |||||||||  || |||||||| | || ||| |||||||||||    
T  4790337 aaaagttgatgtatctagttaaaaatttagtccaaatacattcatttttgttgacctaaatttttcttataaata 4790263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 7269446 - 7269520
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    ||||||||||| |||| ||| |||||| || | | |||||||||| |||||||| | |||||| |||||||||||    
T  7269446 aaaagttgatgcatctggttaaaaattcagtttagatacatcaatttttgttgacccaactttttcttataaata 7269520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 7482314 - 7482240
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| || ||||||||||  |  |||||||| | || |||||||||||||||    
T  7482314 aaaagttgatgtatctagttaaaaattcagttcaaatacattcacttttgttgacctaaatttctcttataaata 7482240  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 13043847 - 13043773
Alignment:
Q  98 aaaagttgatgtatcttgtttaaaatttagatcaaatacatcaatctttgttgatcaaactttctcttataaata 172  Q
    |||||||||||||||| ||| |||||| |  ||||||||||  || |||||||| | || |||||||||||||||    
T  13043847 aaaagttgatgtatctagttaaaaattcaattcaaatacattcatttttgttgacctaaatttctcttataaata 13043773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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