View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11205_high_2 (Length: 415)
Name: NF11205_high_2
Description: NF11205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11205_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 31 - 392
Target Start/End: Complemental strand, 41118157 - 41117796
Alignment:
| Q |
31 |
aagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaattagagtttttatactgattttccaggatgcaggtcccattgccc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41118157 |
aagttaatatgatgatcaaatcttaactttcttaaaatttatttccaacatcaaatgagagtttttatactgattttccaggatgcaggtcccattgccc |
41118058 |
T |
|
| Q |
131 |
atcaggtgcggccacactcttatatccaggttagaatttggataccttttgctcaaacccatttgtctccaacccccacaccccacatatgccttataag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41118057 |
atcaggtgcggccacactcttatatccaggttagaatttggatatcttttgctcaaacccatttgtctccaacccccacaccccacatatgccttataag |
41117958 |
T |
|
| Q |
231 |
tttgtatttatattttatttccttgtttgcatatgcgcaacttctacacatgtaagcttcttttttgttagaatttcagattgaaattttactctaattt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41117957 |
tttgtatttatattttatttccttgtttgcatatgcgcaacttctacacatgtaagcttcttttttgttagaatttcagattgaaattttactctaattt |
41117858 |
T |
|
| Q |
331 |
cttgttctattgttgctaatttatctattatcttgacaacctttcatggttaattcctgatg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41117857 |
cttgttctattgttgctaatttatctattatcttgacaacctttcatggtttattcctgatg |
41117796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 41105906 - 41105803
Alignment:
| Q |
99 |
actgattttccaggatgcaggtcccattgcccatcaggtgcggccacactcttatatccaggttagaatttggataccttttgctcaaacccatttgtct |
198 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
41105906 |
actgattttccaggatggaggtcccatggcccatccagtgcggccacactcttacattaaggttagaatttggataccttttcctcaaatccatttgtct |
41105807 |
T |
|
| Q |
199 |
ccaa |
202 |
Q |
| |
|
|||| |
|
|
| T |
41105806 |
ccaa |
41105803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 41105645 - 41105579
Alignment:
| Q |
325 |
taatttcttgttctattgttgctaatttatctattatcttgacaacctttcatggttaattcctgatg |
392 |
Q |
| |
|
||||||||||| || || ||||||||||| ||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
41105645 |
taatttcttgt-ctgttattgctaatttacctattatcttgacaaccttccatggttcatttctgatg |
41105579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University