View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11205_high_3 (Length: 360)

Name: NF11205_high_3
Description: NF11205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11205_high_3
NF11205_high_3
[»] chr5 (16 HSPs)
chr5 (1-332)||(38816384-38816715)
chr5 (199-314)||(38821813-38821928)
chr5 (10-67)||(22423764-22423822)
chr5 (20-69)||(8420075-8420124)
chr5 (15-67)||(9929668-9929720)
chr5 (322-360)||(1096476-1096514)
chr5 (322-360)||(8286917-8286955)
chr5 (322-360)||(21997608-21997646)
chr5 (322-360)||(23390570-23390608)
chr5 (322-360)||(24529229-24529267)
chr5 (39-69)||(24906250-24906280)
chr5 (322-360)||(25421541-25421579)
chr5 (90-128)||(35665559-35665597)
chr5 (332-360)||(13025320-13025348)
chr5 (332-360)||(13095504-13095532)
chr5 (332-360)||(24493578-24493606)
[»] chr1 (3 HSPs)
chr1 (14-67)||(48547938-48547991)
chr1 (322-360)||(34509789-34509827)
chr1 (322-360)||(50210287-50210325)
[»] scaffold0168 (3 HSPs)
scaffold0168 (6-67)||(21217-21278)
scaffold0168 (6-67)||(21088-21149)
scaffold0168 (6-67)||(21346-21407)
[»] chr6 (9 HSPs)
chr6 (20-67)||(426478-426525)
chr6 (20-67)||(5732474-5732521)
chr6 (2-67)||(8805524-8805592)
chr6 (322-360)||(20076709-20076747)
chr6 (322-360)||(25629429-25629467)
chr6 (39-69)||(34073276-34073306)
chr6 (26-67)||(2117134-2117175)
chr6 (332-360)||(18409911-18409939)
chr6 (321-357)||(19652207-19652243)
[»] chr2 (11 HSPs)
chr2 (20-67)||(19536361-19536408)
chr2 (20-67)||(19574031-19574078)
chr2 (20-66)||(18255945-18255991)
chr2 (322-360)||(22337124-22337162)
chr2 (322-360)||(23040263-23040301)
chr2 (322-360)||(23060522-23060560)
chr2 (322-360)||(23285874-23285912)
chr2 (20-66)||(34691770-34691816)
chr2 (20-66)||(34714182-34714228)
chr2 (332-360)||(8946666-8946694)
chr2 (31-67)||(42511322-42511358)
[»] scaffold0908 (1 HSPs)
scaffold0908 (322-360)||(3260-3298)
[»] scaffold0647 (1 HSPs)
scaffold0647 (322-360)||(6198-6236)
[»] scaffold0540 (1 HSPs)
scaffold0540 (322-360)||(3224-3262)
[»] scaffold0145 (2 HSPs)
scaffold0145 (322-360)||(32951-32989)
scaffold0145 (322-360)||(38770-38808)
[»] scaffold0141 (1 HSPs)
scaffold0141 (322-360)||(39486-39524)
[»] scaffold0122 (1 HSPs)
scaffold0122 (322-360)||(26139-26177)
[»] scaffold0121 (1 HSPs)
scaffold0121 (322-360)||(8603-8641)
[»] scaffold0120 (3 HSPs)
scaffold0120 (322-360)||(16122-16160)
scaffold0120 (323-360)||(33031-33068)
scaffold0120 (323-360)||(45937-45974)
[»] scaffold0080 (1 HSPs)
scaffold0080 (322-360)||(39922-39960)
[»] scaffold0056 (1 HSPs)
scaffold0056 (322-360)||(17291-17329)
[»] scaffold0049 (1 HSPs)
scaffold0049 (322-360)||(75288-75326)
[»] scaffold0046 (1 HSPs)
scaffold0046 (322-360)||(28423-28461)
[»] scaffold0021 (1 HSPs)
scaffold0021 (322-360)||(121775-121813)
[»] scaffold0016 (1 HSPs)
scaffold0016 (322-360)||(1860-1898)
[»] scaffold0011 (1 HSPs)
scaffold0011 (322-360)||(51922-51960)
[»] chr8 (11 HSPs)
chr8 (322-360)||(6759267-6759305)
chr8 (322-360)||(7372787-7372825)
chr8 (322-360)||(16092416-16092454)
chr8 (322-360)||(18818483-18818521)
chr8 (322-360)||(18879305-18879343)
chr8 (322-360)||(20536217-20536255)
chr8 (322-360)||(21924002-21924040)
chr8 (322-360)||(22626745-22626783)
chr8 (322-360)||(23406388-23406426)
chr8 (322-360)||(28649118-28649156)
chr8 (321-357)||(26355771-26355807)
[»] chr7 (6 HSPs)
chr7 (322-360)||(3564438-3564476)
chr7 (322-360)||(9509198-9509236)
chr7 (322-360)||(12698840-12698878)
chr7 (39-68)||(17852091-17852120)
chr7 (2-67)||(11700842-11700909)
chr7 (39-67)||(15680900-15680928)
[»] chr4 (8 HSPs)
chr4 (322-360)||(7088886-7088924)
chr4 (322-360)||(7798783-7798821)
chr4 (322-360)||(16270309-16270347)
chr4 (322-360)||(16377595-16377633)
chr4 (322-360)||(22636444-22636482)
chr4 (322-360)||(52873441-52873479)
chr4 (23-67)||(18844423-18844467)
chr4 (31-67)||(28470448-28470484)
[»] chr3 (11 HSPs)
chr3 (31-69)||(4466538-4466576)
chr3 (39-69)||(5440965-5440995)
chr3 (322-360)||(13442283-13442321)
chr3 (31-69)||(13807237-13807275)
chr3 (322-360)||(14972863-14972901)
chr3 (322-360)||(17487865-17487903)
chr3 (322-360)||(17499347-17499385)
chr3 (322-360)||(20698509-20698547)
chr3 (322-360)||(23083435-23083473)
chr3 (321-357)||(16103792-16103828)
chr3 (31-67)||(27505334-27505370)
[»] scaffold0639 (1 HSPs)
scaffold0639 (332-360)||(8488-8516)
[»] scaffold0450 (1 HSPs)
scaffold0450 (39-67)||(8564-8592)
[»] scaffold0211 (1 HSPs)
scaffold0211 (321-357)||(28843-28879)
[»] scaffold0027 (1 HSPs)
scaffold0027 (21-69)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 38816715 - 38816384
Alignment:
Q  1 ataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagttatattcgtgaatcgtgatagtgttggagact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38816715 ataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcgtgaatcgtgatagtgttggagact 38816616  T
Q  101 gacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816615 gacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttg 38816516  T
Q  201 ttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816515 ttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggaca 38816416  T
Q  301 aatggtatgctgttgtttaggtttaattaaac 332  Q
    ||||||||||||||||||||||||||||||||    
T  38816415 aatggtatgctgttgtttaggtttaattaaac 38816384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 38821928 - 38821813
Alignment:
Q  199 tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga 298  Q
    |||||||||| |||||||||||||||| ||||||||||||||  ||||  | ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  38821928 tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga 38821829  T
Q  299 caaatggtatgctgtt 314  Q
    ||||||||||| ||||    
T  38821828 caaatggtatgatgtt 38821813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 22423822 - 22423764
Alignment:
Q  10 tgtcggtgtggtgtcggtgtc-ggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||| ||||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  22423822 tgtcggtgtcgtgtcggtgtctggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 8420075 - 8420124
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 69  Q
    |||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  8420075 gtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatagtt 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9929668 - 9929720
Alignment:
Q  15 gtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||| |||||||| ||||||| | ||||||||||||||||| |||||||||||    
T  9929668 gtgtcgtgtcggtatcggacacgactaattcgaggagtgtctgtgcttcatag 9929720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 1096514 - 1096476
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  1096514 tttaactaagctgcatgagtcggtctaagttgatgaaga 1096476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 8286917 - 8286955
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  8286917 tttaactaagctgcatgagtcggtctaagttgatgaaga 8286955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 21997608 - 21997646
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  21997608 tttaactaagctgcatgagtcggtctaagttgatgaaga 21997646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 23390570 - 23390608
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23390570 tttaactaagctgcatgagtcggtctaagttgatgaaga 23390608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 24529267 - 24529229
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  24529267 tttaactaagctgcatgagtcggtctaagttgatgaaga 24529229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 24906280 - 24906250
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatagtt 69  Q
    |||||||||||||||||||||||||||||||    
T  24906280 ctaattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 25421579 - 25421541
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  25421579 tttaactaagctgcatgagtcggtctaagttgatgaaga 25421541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  90 tgttggagactgacatctgttggacactggacacacctt 128  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 13025348 - 13025320
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  13025348 ctgcatgagtcggtctaagttgatgaaga 13025320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 13095532 - 13095504
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  13095532 ctgcatgagtcggtctaagttgatgaaga 13095504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 24493606 - 24493578
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  24493606 ctgcatgagtcggtctaagttgatgaaga 24493578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  14 ggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||| |||||||||||||| | | |||||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 34509827 - 34509789
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  34509827 tttaactaagctgcatgagtcggtctaagttgatgaaga 34509789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 50210287 - 50210325
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  50210287 tttaactaagctgcatgagtcggtctaagttgatgaaga 50210325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 21217 - 21278
Alignment:
Q  6 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||||||| ||||||||||||||    
T  21217 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgaggagtatccgtgcttcatag 21278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 21088 - 21149
Alignment:
Q  6 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| ||| ||||||||||||||    
T  21088 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtatccgtgcttcatag 21149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 21346 - 21407
Alignment:
Q  6 tatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||| | ||||||||||| |||| | ||||| |||| |||||| |||||||||||    
T  21346 tatgtgtcggtatcgtgtcggtgtcagacacgcctaatccgagaagtgtctgtgcttcatag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 426525 - 426478
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||||||| | |||||  ||||||||||||||||||||||    
T  426525 gtgtcggtgtcggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 5732521 - 5732474
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  5732521 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8805592 - 8805524
Alignment:
Q  2 taattatgtgtcggtgtggtgtcggt---gtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||||||||| ||||| |    || ||||||| ||||| |||||||||||||||||||||||    
T  8805592 taattatgtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 20076747 - 20076709
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  20076747 tttaactaagctgcatgagtcggtctaagttgatgaaga 20076709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 25629429 - 25629467
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  25629429 tttaactaagctgcatgagtcggtctaagttgatgaaga 25629467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 34073306 - 34073276
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatagtt 69  Q
    |||||||||||||||||||||||||||||||    
T  34073306 ctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 2117134 - 2117175
Alignment:
Q  26 gtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||| |||||  ||||||||||||||||||||||    
T  2117134 gtgtcggacatgcctaatcggaggagtgtccgtgcttcatag 2117175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 18409911 - 18409939
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  18409911 ctgcatgagtcggtctaagttgatgaaga 18409939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 19652243 - 19652207
Alignment:
Q  321 gtttaattaaactgcatgagtcggtctaagttgatga 357  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  19652243 gtttaactaagctgcatgagtcggtctaagttgatga 19652207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 19536408 - 19536361
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||||||    
T  19536408 gtgtcggtgtcggacacgcctaatccgaggagtgtccatgcttcatag 19536361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 19574031 - 19574078
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  19574031 gtgtcggtgtcggacacacctaattcgaggagtgtccatgcttcatag 19574078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 18255991 - 18255945
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 66  Q
    |||||||||||||||| | ||||| | ||||||||||||||||||||    
T  18255991 gtgtcggtgtcggacacgcctaatccaaggagtgtccgtgcttcata 18255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 22337162 - 22337124
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  22337162 tttaactaagctgcatgagtcggtctaagttgatgaaga 22337124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 23040263 - 23040301
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23040263 tttaactaagctgcatgagtcggtctaagttgatgaaga 23040301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 23060560 - 23060522
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23060560 tttaactaagctgcatgagtcggtctaagttgatgaaga 23060522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 23285912 - 23285874
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23285912 tttaactaagctgcatgagtcggtctaagttgatgaaga 23285874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 34691816 - 34691770
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 66  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34691816 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 34714228 - 34714182
Alignment:
Q  20 gtgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcata 66  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  34714228 gtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 8946694 - 8946666
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  8946694 ctgcatgagtcggtctaagttgatgaaga 8946666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 42511358 - 42511322
Alignment:
Q  31 ggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  42511358 ggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 3260 - 3298
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  3260 tttaactaagctgcatgagtcggtctaagttgatgaaga 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0647 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0647
Description:

Target: scaffold0647; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 6198 - 6236
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  6198 tttaactaagctgcatgagtcggtctaagttgatgaaga 6236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0540 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0540
Description:

Target: scaffold0540; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 3224 - 3262
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  3224 tttaactaagctgcatgagtcggtctaagttgatgaaga 3262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 32989 - 32951
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  32989 tttaattaagctgcatgagtcggtctaacttgatgaaga 32951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 38808 - 38770
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  38808 tttaattaagctgcatgactcggtctaagttgatgaaga 38770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 39524 - 39486
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  39524 tttaactaagctgcatgagtcggtctaagttgatgaaga 39486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 26139 - 26177
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  26139 tttaactaagctgcatgagtcggtctaagttgatgaaga 26177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 8603 - 8641
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  8603 tttaactaagctgcatgagtcggtctaagttgatgaaga 8641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 16160 - 16122
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  16160 tttaactaagctgcatgagtcggtctaagttgatgaaga 16122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 33031 - 33068
Alignment:
Q  323 ttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  33031 ttaactaagctgcatgagtcggtctaagttgatgaaga 33068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 45974 - 45937
Alignment:
Q  323 ttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  45974 ttaactaagctgcatgagtcggtctaagttgatgaaga 45937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 39960 - 39922
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  39960 tttaattaagctgcatgagttggtctaagttgatgaaga 39922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 17291 - 17329
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  17291 tttaactaagctgcatgagtcggtctaagttgatgaaga 17329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 75288 - 75326
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  75288 tttaactaagctgcatgagtcggtctaagttgatgaaga 75326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 28461 - 28423
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  28461 tttaactaagctgcatgagtcggtctaagttgatgaaga 28423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 121813 - 121775
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  121813 tttaactaagctgcatgagtcggtctaagttgatgaaga 121775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 1898 - 1860
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  1898 tttaactaagctgcatgagtcggtctaagttgatgaaga 1860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 51960 - 51922
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  51960 tttaactaagctgcatgagtcggtctaagttgatgaaga 51922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 6759305 - 6759267
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  6759305 tttaactaagctgcatgagtcggtctaagttgatgaaga 6759267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 7372825 - 7372787
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  7372825 tttaactaagctgcatgagtcggtctaagttgatgaaga 7372787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 16092416 - 16092454
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  16092416 tttaactaagctgcatgagtcggtctaagttgatgaaga 16092454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 18818483 - 18818521
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  18818483 tttaactaagctgcatgagtcggtctaagttgatgaaga 18818521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 18879305 - 18879343
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  18879305 tttaactaagctgcatgagtcggtctaagttgatgaaga 18879343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 20536255 - 20536217
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  20536255 tttaactaagctgcatgagtcggtctaagttgatgaaga 20536217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 21924002 - 21924040
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  21924002 tttaactaagctgcatgagtcggtctaagttgatgaaga 21924040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 22626783 - 22626745
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  22626783 tttaactaagctgcatgagtcggtctaagttgatgaaga 22626745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 23406426 - 23406388
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23406426 tttaactaagctgcatgagtcggtctaagttgatgaaga 23406388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 28649118 - 28649156
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  28649118 tttaactaagctgcatgagtcggtctaagttgatgaaga 28649156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 26355771 - 26355807
Alignment:
Q  321 gtttaattaaactgcatgagtcggtctaagttgatga 357  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  26355771 gtttaactaagctgcatgagtcggtctaagttgatga 26355807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 3564438 - 3564476
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  3564438 tttaactaagctgcatgagtcggtctaagttgatgaaga 3564476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 9509236 - 9509198
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  9509236 tttaactaagctgcatgagtcggtctaagttgatgaaga 9509198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 12698878 - 12698840
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  12698878 tttaactaagctgcatgagtcggtctaagttgatgaaga 12698840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 17852091 - 17852120
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatagt 68  Q
    ||||||||||||||||||||||||||||||    
T  17852091 ctaattcgaggagtgtccgtgcttcatagt 17852120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 11700842 - 11700909
Alignment:
Q  2 taattatgtgtcggtgtggtgtcggtgtcgg--acatggctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||| |||| || ||||||||||  ||| ||||||| |||||||||||| || |||||||    
T  11700842 taattatgtgtctgtgttgtctcggtgtcggacacacggctaatccgaggagtgtccctgattcatag 11700909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 15680900 - 15680928
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||||||||||||||||||||    
T  15680900 ctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 7088924 - 7088886
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  7088924 tttaactaagctgcatgagtcggtctaagttgatgaaga 7088886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 7798821 - 7798783
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  7798821 tttaactaagctgcatgagtcggtctaagttgatgaaga 7798783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 16270309 - 16270347
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  16270309 tttaattaagctgcatgagtcggtctaacttgatgaaga 16270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 16377595 - 16377633
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  16377595 tttaactaagctgcatgagtcggtctaagttgatgaaga 16377633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 22636482 - 22636444
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  22636482 tttaactaagctgcatgagtcggtctaagttgatgaaga 22636444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 52873441 - 52873479
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  52873441 tttaactaagctgcatgagtcggtctaagttgatgaaga 52873479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18844467 - 18844423
Alignment:
Q  23 tcggtgtcggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||||    
T  18844467 tcggtgtcggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 28470448 - 28470484
Alignment:
Q  31 ggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  28470448 ggacatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 4466576 - 4466538
Alignment:
Q  31 ggacatggctaattcgaggagtgtccgtgcttcatagtt 69  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  4466576 ggacacggcttattcgaggagtgtccgtgcttcatagtt 4466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 5440995 - 5440965
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatagtt 69  Q
    |||||||||||||||||||||||||||||||    
T  5440995 ctaattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 13442321 - 13442283
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  13442321 tttaactaagctgcatgagtcggtctaagttgatgaaga 13442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 13807237 - 13807275
Alignment:
Q  31 ggacatggctaattcgaggagtgtccgtgcttcatagtt 69  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  13807237 ggacatgcctaattcgaggagtgtccgtgtttcatagtt 13807275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 14972901 - 14972863
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  14972901 tttaactaagctgcatgagtcggtctaagttgatgaaga 14972863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 17487903 - 17487865
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  17487903 tttaactaagctgcatgagtcggtctaagttgatgaaga 17487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 17499385 - 17499347
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  17499385 tttaactaagctgcatgagtcggtctaagttgatgaaga 17499347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 20698509 - 20698547
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  20698509 tttaactaagctgcatgagtcggtctaagttgatgaaga 20698547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 23083435 - 23083473
Alignment:
Q  322 tttaattaaactgcatgagtcggtctaagttgatgaaga 360  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  23083435 tttaactaagctgcatgagtcggtctaagttgatgaaga 23083473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 16103828 - 16103792
Alignment:
Q  321 gtttaattaaactgcatgagtcggtctaagttgatga 357  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  16103828 gtttaactaagctgcatgagtcggtctaagttgatga 16103792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 27505334 - 27505370
Alignment:
Q  31 ggacatggctaattcgaggagtgtccgtgcttcatag 67  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  27505334 ggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0639 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0639
Description:

Target: scaffold0639; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 8516 - 8488
Alignment:
Q  332 ctgcatgagtcggtctaagttgatgaaga 360  Q
    |||||||||||||||||||||||||||||    
T  8516 ctgcatgagtcggtctaagttgatgaaga 8488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 8592 - 8564
Alignment:
Q  39 ctaattcgaggagtgtccgtgcttcatag 67  Q
    |||||||||||||||||||||||||||||    
T  8592 ctaattcgaggagtgtccgtgcttcatag 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 28843 - 28879
Alignment:
Q  321 gtttaattaaactgcatgagtcggtctaagttgatga 357  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  28843 gtttaactaagctgcatgagtcggtctaagttgatga 28879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 46731 - 46778
Alignment:
Q  21 tgtcggtgtcggacatggctaattcgaggagtgtccgtgcttcatagtt 69  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  46731 tgtcggtgtcg-acacgcctaatccgaggagtgtccgtgcttcatagtt 46778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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