View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11206_high_1 (Length: 672)

Name: NF11206_high_1
Description: NF11206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11206_high_1
NF11206_high_1
[»] chr7 (1 HSPs)
chr7 (1-654)||(7166462-7167092)


Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Original strand, 7166462 - 7167092
Alignment:
Q  1 aaaaaatcaaagaagaaaagaaggatatggaaattgcagtacctctccgattcgatgctgggcgacactaaaactaaacaaccatacaacttggttgacg 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||    
T  7166462 aaaaaaacaaagaagaaaagaaggatatggaaattgcagtacctctcctattcgatgct----------aaaactaaacaaccatacaacttggttgacg 7166551  T
Q  101 aaacctgtggcggatggatctttccggtgagggatggccgagaactcgtcaaatattgcgacatgatatcccttgtgctttgtcatcagcgtcaacaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  7166552 aaacctgtggcggatggatctttccggtgagggatggccgagaactcgtcaaatattgcgacatgatatcccttgtgctttgtcattagcgtcaacaaac 7166651  T
Q  201 cctttggcttgcacactaattgatcaatgggtgagaacgcacaactctaaactcaaacaaaa-ttacatagtagcatatccgagatatcattgatgtaat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7166652 cctttggcttgcacactaattgatcaatgggtgagaacgcacaactctaaactcaaacaaaaattacatagtagcatatccgagatatcattgatgtaat 7166751  T
Q  300 nnnnnnnntctaagatatcaaaataaacaagggtttatactgtttttgtcatgtaataagtttagattttatcattaacatatttttatttgtcatgtaa 399  Q
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166752 aaaaaaa-tctaagatatcaaaataaataagggtttatactgtttttgtcatgtaataagtttagattttatcattaacatatttttatttgtcatgtaa 7166850  T
Q  400 taagtttagaatttatcttgaacatatttttatttggaatacataagggtcgaagctacaatatccttaacattttagattcttcaattttaatccttca 499  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7166851 taagtttagaatttatctttaacatatttttatttggaatacataagggtcgaagctacaatatccttaacattttagattcttcaattttaatccttca 7166950  T
Q  500 tttaactttagtcatttgaatatgtgtaaccaacattttagtccaaacttaaatgaagaacttaaataaaaaatatgaattgttaagggtagaatctann 599  Q
    ||||||||||||||||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||| ||||||||||||      
T  7166951 tttaactttagtcatttgaatatgtgtaacccacattttagtcca-------------aacttaaataaaaaatatgaattgttaggggtagaatctatt 7167037  T
Q  600 nnnnnnagagggactaataccgaattcgctccatatatattgtagagacaaaaaa 654  Q
          |||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  7167038 ttttttagagggactaataccgaattcgttccatatatattgtaaagaccaaaaa 7167092  T

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