View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11206_high_2 (Length: 489)
Name: NF11206_high_2
Description: NF11206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11206_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 2341351 - 2340867
Alignment:
| Q |
1 |
tccatattgctccaacggaaggttcacaaggtttggtctta--------------tcctccttaacatatccttcacgttcaatctacaagaggcaaata |
86 |
Q |
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| T |
2341351 |
tccatattgctccaacggaaggttcacaaggtttggtcttagttggattctgtcatcttccttaacatatccttcacgttccatctacaagaggcaaata |
2341252 |
T |
|
| Q |
87 |
ttttactactgagagaacaatttgacagatttatcctgcatatgtttcattctcggaaagagtaacatacctgtgaactgtactggtcagcaagtaaatc |
186 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341251 |
ttttactactgaga--acaatttgacagatttatcctgcatatgtttcattctcggaaagagtaacatacctgtgaactgtactggtcagcaagtaaatc |
2341154 |
T |
|
| Q |
187 |
cgcaaaaggctgtccacaaattggttacataaatcagtgcaataaaattgcagaaactcctttctattatatatttgaagacaagaaattcaaatatgtg |
286 |
Q |
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| T |
2341153 |
cgcaaaaggctgtccacaaattggttacataaatcagtgcaataaaattgcagaaactcctttctattatatatttgaagacaagaaattcaaatatgtg |
2341054 |
T |
|
| Q |
287 |
tgctataatagctttcatagttcatggtcgacaatgaccgatacaccaccatgttaatgctgagacaataataggaaatgatacatacaaaaactgtgta |
386 |
Q |
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| T |
2341053 |
tgctataatagctttcatagttcatggtcgacaatgaccgacacaccaccatgttaatgctgagacaataataggaaatgatacatacaaaaactgtgta |
2340954 |
T |
|
| Q |
387 |
tccaaaataaaaaagtgggaataaactatgccttttaacaagaaatggatgctgacgaagtgaaagtaaatattatggccaaaatgt |
473 |
Q |
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| T |
2340953 |
tccaaaataaaaaagtgggaataaactatgccttttaacaagaaatggatgctgacgaagtgaaagtaaatattatggccaaaatgt |
2340867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 45 - 311
Target Start/End: Complemental strand, 7751437 - 7751173
Alignment:
| Q |
45 |
tccttaacatatccttcacgttcaatctacaagaggcaaatattttactactgagagaacaatttgacagat-ttatcctgcatatgtttcattctcgga |
143 |
Q |
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|||||||||||||| ||| ||||||||||||||| ||| || |||||| | | ||| |||||||||||||| || ||| | |||| |||| ||| | |
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| T |
7751437 |
tccttaacatatccatcatgttcaatctacaagaagcagattttttacaattaagaaaacaatttgacagagattttccatcgtatgattcaagctcaaa |
7751338 |
T |
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| Q |
144 |
aagagtaacatacctgtgaactgtactggtcagcaagtaaatccgcaaaaggctgtccacaaattggttacataaatcagtgcaataaaattgcagaaac |
243 |
Q |
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||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| ||||||| ||||| |||||||||||||| |||||||||| |||| |
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| T |
7751337 |
aagagtaacatacctgtgaactgaactggtctgcaagcaaatccgcaaaatgctgcccacaaa-tggtttcataaatcagtgcagtaaaattgcaaaaac |
7751239 |
T |
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| Q |
244 |
tcctttctattatatatttgaagacaagaaattcaaatatgtgtgctataatagctttcatagttcat |
311 |
Q |
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| T |
7751238 |
tcctttctat--tgtattgaaagacaagaaattcaaatatgtgtgctacagtagctttgatagttcat |
7751173 |
T |
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