View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11206_high_3 (Length: 380)
Name: NF11206_high_3
Description: NF11206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11206_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 51935626 - 51935266
Alignment:
| Q |
1 |
atcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatatttt |
100 |
Q |
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| T |
51935626 |
atcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatatttt |
51935527 |
T |
|
| Q |
101 |
aagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacctgaaga |
200 |
Q |
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| T |
51935526 |
aagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacctgaaga |
51935427 |
T |
|
| Q |
201 |
gctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagac |
300 |
Q |
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| T |
51935426 |
gctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagac |
51935327 |
T |
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| Q |
301 |
atgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaaga |
361 |
Q |
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| T |
51935326 |
atgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaaga |
51935266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 174 - 361
Target Start/End: Complemental strand, 28138193 - 28138006
Alignment:
| Q |
174 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
273 |
Q |
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| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
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| Q |
274 |
tacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaaga |
361 |
Q |
| |
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|||||||| || ||||| || | || | |||||| |||| |||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
28138093 |
tacatgacatcttcaaccagtgttgatcttaatctttcaaggaaggaaatggtcattcttggaacacaatatgctggtgaaatgaaga |
28138006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 12996152 - 12995964
Alignment:
| Q |
173 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
272 |
Q |
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| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
|
| Q |
273 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaaga |
361 |
Q |
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| T |
12996052 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaaga |
12995964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 361
Target Start/End: Complemental strand, 13070805 - 13070617
Alignment:
| Q |
173 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
272 |
Q |
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||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
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| Q |
273 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaaga |
361 |
Q |
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|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || |||||||||| |
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| T |
13070705 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaaga |
13070617 |
T |
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