View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11206_low_4 (Length: 364)
Name: NF11206_low_4
Description: NF11206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11206_low_4 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 22416364 - 22416151
Alignment:
| Q |
11 |
atgaatggaggccaaaaatcgctcgtcccaaaatgctcattacccagaaacaacatcatacaagtttaacatgcgcatcttctctcacgctagagattaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22416364 |
atgaatggaggccaaaaatcgctcgtcccaaaatgctcattacccagaaacaacatcatacaagtttaacatgcgtatcttctctcacgctagagattaa |
22416265 |
T |
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| Q |
111 |
tacaaaagctgtcattatcataaattacttaagttgtaaacacaaaaggttggacttgcaacaaattatcaagctgcaatgccaaaaaagctcctcacta |
210 |
Q |
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| T |
22416264 |
tacaaaagctgtcattatcataaattacttaagttgtaaacacaaaaggttggacttgcaacaaattatcgagctgcaatgccaaaaaagctcctcacta |
22416165 |
T |
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| Q |
211 |
actatgcactttct |
224 |
Q |
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|||||||||||||| |
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| T |
22416164 |
actatgcactttct |
22416151 |
T |
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Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 29109 - 29150
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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| T |
29109 |
gccttgttgacttattcctaagaagctgatttggcagaatat |
29150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 44312837 - 44312878
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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| T |
44312837 |
gccttgttgacttattcctaagaagctgatttggcagaatat |
44312878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 44316642 - 44316683
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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| T |
44316642 |
gccttgttgacttattcctaagaagctgatttggcagaatat |
44316683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 34096429 - 34096388
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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| T |
34096429 |
gccttgttgacttattcctaagaagctgatttggcagaatat |
34096388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 34100062 - 34100021
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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| T |
34100062 |
gccttgttgacttattcctaagaagatgatttggcagaatat |
34100021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 21611222 - 21611181
Alignment:
| Q |
307 |
gccttgttgacgtattcctaagaagctgatttggcagaatat |
348 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
21611222 |
gccttgttgacttattcctaagaagttgatttggcagaatat |
21611181 |
T |
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