View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11206_low_5 (Length: 266)
Name: NF11206_low_5
Description: NF11206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11206_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 51935609 - 51935765
Alignment:
| Q |
1 |
tactattcggactttgattctgtgttctggatcccaattcagaaattgatcattcacataaacctgaattcagatcaactacaaggtcagaaacagggaa |
100 |
Q |
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| T |
51935609 |
tactattcggactttgattctgtgttctggatcccaattcagaaattgatcattcacataaacctgaattcagatcaactacaaggtcagaaacagggaa |
51935708 |
T |
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| Q |
101 |
actagtcattgatactcattgttttctctccttttgtttgattgtgtaagacatgag |
157 |
Q |
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| T |
51935709 |
actagtcattgatactcattgttttctctccttttgtttgattgtgtaagacatgag |
51935765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 256
Target Start/End: Original strand, 51935858 - 51935893
Alignment:
| Q |
221 |
cattggactctcaaagtgcaactcattccttctctg |
256 |
Q |
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| T |
51935858 |
cattggactctcaaagtgcaactcattccttctctg |
51935893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 28138345 - 28138403
Alignment:
| Q |
10 |
gactttgattctgtgttctggatcccaattcagaaattgatcattcacataaacctgaa |
68 |
Q |
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| T |
28138345 |
gactttgattctgttctctggatcccagttcaagaattgatcattcacaaaaacctgaa |
28138403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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