View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11207_high_12 (Length: 506)
Name: NF11207_high_12
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 3300652 - 3301121
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300652 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
3300751 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300752 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
3300851 |
T |
|
| Q |
217 |
ctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgcatcttcaaagggctaaaacgttcaaataccttgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300852 |
ctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgcatcttcaaagggctaaaacgttcaaataccttgtt |
3300951 |
T |
|
| Q |
317 |
gcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggta |
416 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3300952 |
gcagcaa-aaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggta |
3301050 |
T |
|
| Q |
417 |
gtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301051 |
gtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
3301121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 43044918 - 43045385
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43044918 |
tcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
43045017 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||| |
|
|
| T |
43045018 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccat |
43045117 |
T |
|
| Q |
217 |
ctgttcacgatagcaagacaatgagaatttgta--taaataaagtaatcacagaaataatcaa--atgcatcttcaaagggctaaaacgttcaaatacct |
312 |
Q |
| |
|
||||||| ||||| ||| |||| ||| |||||||| ||| | | |||||||||| || || |||||| ||||| ||| | |||||||| |
|
|
| T |
43045118 |
ctgttcaagatag-------atgcaaattagtacttaaataaatgaattataaaaataatcaaatatacaacttcaaggggctgaaaatattaaatacct |
43045210 |
T |
|
| Q |
313 |
tgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccacc |
412 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
43045211 |
tgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccacc |
43045310 |
T |
|
| Q |
413 |
ggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
43045311 |
agtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccct |
43045385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 43067073 - 43066861
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43067073 |
tcaagggcctcaagaagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
43066974 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||| |
|
|
| T |
43066973 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccat |
43066874 |
T |
|
| Q |
217 |
ctgttcacgatag |
229 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
43066873 |
ctgttcaagatag |
43066861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 43083762 - 43083974
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083762 |
tcaagtgcctcaagaagggttggacccttgtaccagtcaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
43083861 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||| |
|
|
| T |
43083862 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcatcatatctacccttggagtacttgggtgtagtagcatccat |
43083961 |
T |
|
| Q |
217 |
ctgttcacgatag |
229 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
43083962 |
ctgttcaagatag |
43083974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 487
Target Start/End: Complemental strand, 45984058 - 45983606
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45984058 |
tcaatagcttcaagaagggttggacccttgtaccaatcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaattggaa |
45983959 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
| | |||||||||||||| |||||| ||| | |||||| | ||||||||||| |||||||| || | ||||| |||||||||||||||||||| |
|
|
| T |
45983958 |
t------aagtttatagccaaccttattcaaacagggtaaaacttgcctcacaatttctacatacctatccctagagtatttaggtgtagtggcatccat |
45983865 |
T |
|
| Q |
217 |
ctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgc-atcttcaaagggctaaaacgttcaaataccttgt |
315 |
Q |
| |
|
||| || | ||| | || ||| || | || ||||||| ||| | | |||||||||||| | ||||| || |||| ||| | ||||||||||| |
|
|
| T |
45983864 |
ctg-tcggggtag-atgataattagtacttatataaat----gaattataaaaataatcaaatacaatcttaaaggggcggaaa-atataaataccttgt |
45983772 |
T |
|
| Q |
316 |
tgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggt |
415 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||| | |||||||||||||||||||| || |
|
|
| T |
45983771 |
tgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattc------ataccggcttcaaaaccaccagt |
45983678 |
T |
|
| Q |
416 |
agtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
45983677 |
agtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccct |
45983606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 43045656 - 43045838
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
43045656 |
aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca |
43045755 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
43045756 |
aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccct |
43045838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 305 - 487
Target Start/End: Complemental strand, 43066751 - 43066569
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
43066751 |
aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca |
43066652 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
43066651 |
aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccct |
43066569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 43084084 - 43084266
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
43084084 |
aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca |
43084183 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
43084184 |
aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccct |
43084266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 305 - 487
Target Start/End: Complemental strand, 45993568 - 45993386
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
45993568 |
aaataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttca |
45993469 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
45993468 |
aaaccacgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccct |
45993386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 43076928 - 43076774
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076928 |
tcaagggccccaagaagggttggacccttgtaccagttaaggtttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
43076829 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaat |
171 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43076828 |
tgttttctgggttatagccaaccttcttcaaataggatgaaacttcctccacaat |
43076774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 38138222 - 38138019
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||| || |||||||| || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38138222 |
tcaagagcttcaagaagggtgggacccttataccagtcaaggttagtagagcgttcaatgatgttatctccctcaaaaccagagatgggaacaaatggaa |
38138123 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
||| ||| ||||||||||||| | ||||| ||| ||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
38138122 |
tttcatctaggttatagccaacatcaatcaaaaagggtgaaaattccttcacaatttcttcatacctatccttggagtatttgggtgtagtggcatccat |
38138023 |
T |
|
| Q |
217 |
ctgt |
220 |
Q |
| |
|
|||| |
|
|
| T |
38138022 |
ctgt |
38138019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 50912296 - 50912503
Alignment:
| Q |
16 |
atcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatgga |
115 |
Q |
| |
|
||||||||| |||| |||||| ||||| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
50912296 |
atcaagagcttcaataagggtgggacctttgtaccagtcaaggttagtagagcgctcaatgatgttatctccctcaaaaccagagatgggaataaacgga |
50912395 |
T |
|
| Q |
116 |
attttgtctgggtt---atagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcat |
212 |
Q |
| |
|
|||| ||| | || |||||||||| |||| | | ||| ||||| ||| ||||||||||||||||||||||| ||||| || || ||||| |||| |
|
|
| T |
50912396 |
atttcatctagattatcatagccaaccctctttagaaagggtgaaaggatcttaacaatttcttcatacctacccttggagtatttgggagtagtagcat |
50912495 |
T |
|
| Q |
213 |
ccatctgt |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
50912496 |
ccatctgt |
50912503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 487
Target Start/End: Complemental strand, 38137936 - 38137754
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||| ||| ||||||||||| |||||| |||||| || |||| ||| ||| |||||| |
|
|
| T |
38137936 |
aaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttca |
38137837 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||| ||| || ||||||||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
38137836 |
aaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccct |
38137754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 7891314 - 7891113
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||| ||||| || | ||||||||| || |||||||||||||| |||||||||| || | ||| |||| |
|
|
| T |
7891314 |
tcaagagcttcaagaagggtgggacccgtgtaccaatcaaggttagaagagcgctcaatgatgttatctccctcgtaaccagagatagggataaaaggaa |
7891215 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||| || ||||||||||||||| ||||| ||| ||||| || ||||||||| |||||||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
7891214 |
ttttacctaggttatagccaacctcactcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccat |
7891115 |
T |
|
| Q |
217 |
ct |
218 |
Q |
| |
|
|| |
|
|
| T |
7891114 |
ct |
7891113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 487
Target Start/End: Complemental strand, 7888849 - 7888673
Alignment:
| Q |
311 |
cttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaacca |
410 |
Q |
| |
|
|||||||||||| || ||||||| | ||||| |||| ||| ||||| || | |||||| |||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
7888849 |
cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca |
7888750 |
T |
|
| Q |
411 |
ccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||||||||| || | || || ||||||||||| ||||||||||| |
|
|
| T |
7888749 |
ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccct |
7888673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 484
Target Start/End: Complemental strand, 40035046 - 40034595
Alignment:
| Q |
26 |
tcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctg |
125 |
Q |
| |
|
|||| |||||| ||||| |||||||| ||||| || ||||||||||| || ||||| ||||| |||||||||| ||||||| ||||||||| | | |
|
|
| T |
40035046 |
tcaaaaagggtgggacctttgtaccaatcaaggttagtagagcgctcaatgatgttttctccaacaaaaccagatatgggaataaatggaatgtcagata |
40034947 |
T |
|
| Q |
126 |
ggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatctgttcacg |
225 |
Q |
| |
|
|||||||||||||||| ||||| || || | | | |||||| ||||||| |||||||||| ||||| || |||||||| |||||||||||| || | |
|
|
| T |
40034946 |
ggttatagccaaccttgatcaaaaggggggagaaattcgtcacaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgt-caag |
40034848 |
T |
|
| Q |
226 |
atagcaagacaatgagaatttg-tataaataaagtaatcacagaaataatcaaatgcatcttcaaaggg-ctaaaacgttcaaataccttgttgcagcaa |
323 |
Q |
| |
|
|||| | || ||| || | || ||||||| || || | | |||||| ||||| || ||| |||||| || || | |||||||||||||||||| |
|
|
| T |
40034847 |
atag-atgataattagtacttaatataaatgaactataaataaaaataaacaaatacaactttaaaggggctggaaatat-aaataccttgttgcagcag |
40034750 |
T |
|
| Q |
324 |
caaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaat |
423 |
Q |
| |
|
|| |||||||| |||||||||||||| | ||||||||||| |||||| |||||| ||| ||| ||||| | ||||||| ||| || |||||| |
|
|
| T |
40034749 |
cagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtggtctgacca----ttg--ataccagtctcaaaactaccagttctggaat |
40034656 |
T |
|
| Q |
424 |
caatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc |
484 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| || || || | ||||||||| |||||||| |
|
|
| T |
40034655 |
caatgatgagaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaatc |
40034595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 487
Target Start/End: Complemental strand, 7891086 - 7890938
Alignment:
| Q |
339 |
acaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacag |
438 |
Q |
| |
|
|||||||||| ||| ||||| || | |||||| |||||| |||| ||| ||| ||| || ||||||||||| || ||||||||||| ||||||| |
|
|
| T |
7891086 |
acaccaagagcgaatgcaagttgaacatgttcagtggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacag |
7890987 |
T |
|
| Q |
439 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||| ||||||| ||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
7890986 |
cacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccct |
7890938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 43076746 - 43076686
Alignment:
| Q |
423 |
tcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaat |
483 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
43076746 |
tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaat |
43076686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 7888938 - 7888848
Alignment:
| Q |
128 |
ttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccatct |
218 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||||| |
|
|
| T |
7888938 |
ttatagccaacctctctcaaaaagggtgaaacttgattcacaatttcttcatacctgtcctaggagtatatgggtgtagtggcatccatct |
7888848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 4231382 - 4231858
Alignment:
| Q |
16 |
atcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatgga |
115 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4231382 |
atcaagagcctcaagaagtgttggacccttgtaccagtcaagatttgtagagcgctcaatcatgttatctccctcaaaaccagagatgggaacaaatgga |
4231481 |
T |
|
| Q |
116 |
attttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatcca |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| | ||| |||||||| || |||||||| |||| |
|
|
| T |
4231482 |
attttatctgggttatagccaaccttcttcatgtaggatgatacttccttcacaatttcatcatacctgctcttggagtacttgggagtagtggcgtcca |
4231581 |
T |
|
| Q |
216 |
tctgttcacgatagcaagacaatgagaatttgtataaataaagtaatcacagaaataatcaaatgcatcttcaaaggg----ctaaaa------cgttca |
305 |
Q |
| |
|
|||||||| |||||||| | ||| || | |||||||| | ||| | | ||||| |||||||| || ||||||| | |||| ||||| |
|
|
| T |
4231582 |
tctgttcaagatagcaa-aaaatcagtacttgtataagca----aattataaaaatatccaaatgcaactacaaaggggaatcaaaaaatttacagttca |
4231676 |
T |
|
| Q |
306 |
aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa |
405 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
4231677 |
aataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaa |
4231776 |
T |
|
| Q |
406 |
aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4231777 |
aaccaccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccct |
4231858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 7520084 - 7519882
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||||||||| || || || ||||||||||||||||| || ||||| | ||| |||||||| || || |||||||||||||| ||||||||||| | |
|
|
| T |
7520084 |
tcaagagcctcaaggagagttggtcccttgtaccagtcaaggttggtagacctctcaatcatgttgtcaccttcaaaaccagagattggaacaaatggga |
7519985 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||| |||| |||||||| || || || |||||||| |
|
|
| T |
7519984 |
ttttgtctgggttgtaaccaaccttcttcaagtaggatgaaacttccttcacgatttcatcgtacctagcctttgagtacttgggggtggtagcatccat |
7519885 |
T |
|
| Q |
217 |
ctg |
219 |
Q |
| |
|
||| |
|
|
| T |
7519884 |
ctg |
7519882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 7519792 - 7519616
Alignment:
| Q |
308 |
taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa |
407 |
Q |
| |
|
||||||||| || ||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| ||||||||| |
|
|
| T |
7519792 |
taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaa |
7519693 |
T |
|
| Q |
408 |
ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc |
484 |
Q |
| |
|
||||| || ||||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7519692 |
ccaccagtggtggagtcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatc |
7519616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 308 - 484
Target Start/End: Complemental strand, 7529163 - 7528987
Alignment:
| Q |
308 |
taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa |
407 |
Q |
| |
|
||||||||| || ||||| ||||| |||||||| |||||||| || |||||||||||||| ||||||||||| |||||||| || ||||| ||||||||| |
|
|
| T |
7529163 |
taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaa |
7529064 |
T |
|
| Q |
408 |
ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc |
484 |
Q |
| |
|
||||| || ||||| |||||||| || || ||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
7529063 |
ccaccagtggtggagtcaatgataagcacggcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatc |
7528987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 7529621 - 7529419
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||||||||| || || || ||||||||||||||||| || || || | ||| |||||||| || || ||||| || ||||||||||||||||| | |
|
|
| T |
7529621 |
tcaagagcctcaaggagagttggtcccttgtaccagtcaaggttggtggacctctcaatcatgttgtcaccttcaaatccggagatgggaacaaatggga |
7529522 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
||||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||| |||| |||||||| || || || |||||||| |
|
|
| T |
7529521 |
ttttgtcagggttgtaaccaaccttcttcaagtaggatgaaacttccttcacgatttcatcgtacctagcctttgagtacttgggggtggtagcatccat |
7529422 |
T |
|
| Q |
217 |
ctg |
219 |
Q |
| |
|
||| |
|
|
| T |
7529421 |
ctg |
7529419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 306 - 487
Target Start/End: Original strand, 16349349 - 16349530
Alignment:
| Q |
306 |
aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa |
405 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||||||| | ||||| | ||||| ||||||||| |||| |||| || |||||||||||| ||| |
|
|
| T |
16349349 |
aataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaa |
16349448 |
T |
|
| Q |
406 |
aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||| | | ||||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16349449 |
aaccagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccct |
16349530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 16349065 - 16349233
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||| ||||||||| |||| | || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16349065 |
tcaagagcttcaagaagggtgggacccttgtacccatcaagttttgtagagggctcaaccaagttatctccctcaaaaccagagatgggaacaaatgtaa |
16349164 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctac |
185 |
Q |
| |
|
|| |||| | ||||||||||| ||| ||||| ||||||| || |||||||||||||| |||||| |
|
|
| T |
16349165 |
cttcgtcttgtttatagccaacgttcatcaaaattgatgaaagttgactcacaatttcttcaaacctac |
16349233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 33860759 - 33860879
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33860759 |
tcaagagcttcaagaagggtgggacccttgtaccagtcaagattagtagagcgctcaatcaagttatctccctcaaaaccagagatgggaacaaatggaa |
33860858 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaa |
137 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
33860859 |
ctttgtctaggttatagccaa |
33860879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 34690764 - 34690966
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||| || || |||||||| || ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34690764 |
tcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaacaaatggaa |
34690863 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||| |||| |||||| |||| | || ||||| || ||||| | ||||||||||| |||||||||| |||| ||||| || |||||| |||||||||| |
|
|
| T |
34690864 |
ttttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagtatttgggtgtaatggcatccat |
34690963 |
T |
|
| Q |
217 |
ctg |
219 |
Q |
| |
|
||| |
|
|
| T |
34690964 |
ctg |
34690966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 34713176 - 34713378
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||| || || |||||||| || ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
34713176 |
tcaagagcttcaagaagggtaggaccttcgtaccagtcaaggttagtcgagcgctcaatgatgttatctcccttataaccagagatgggaacaaatggaa |
34713275 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||| |||| |||||| |||| | || ||||| || ||||| | ||||||||||| |||||||||| |||| ||||| || |||||| |||||||||| |
|
|
| T |
34713276 |
ttttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttcacaattagttcatacctatccttggagtatttgggtgtaatggcatccat |
34713375 |
T |
|
| Q |
217 |
ctg |
219 |
Q |
| |
|
||| |
|
|
| T |
34713376 |
ctg |
34713378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 34691036 - 34691218
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| || ||| ||| |
|
|
| T |
34691036 |
aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc |
34691135 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||| | ||||| |||||||||| ||||||||||| ||||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
34691136 |
aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccct |
34691218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 34713448 - 34713630
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| || ||| ||| |
|
|
| T |
34713448 |
aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc |
34713547 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
||||| | ||||| |||||||||| ||||||||||| ||||||||||| || || || ||||||||||||||||||||||| |
|
|
| T |
34713548 |
aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccct |
34713630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 16232105 - 16232308
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||| ||| |||| ||||||||| || | ||||||||||| || ||||||||||| | |||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
16232105 |
tcaatagcttcaacaagggtaggcccatcataccagtcaaggttagtagagcgctcaacgatgttatctcacttaaaaccagagatgggaacaaatggaa |
16232204 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
| | || | |||||| |||| | || ||||| || ||||||| ||||||||||| ||||||| || |||| ||||| || ||||||||||||| ||| |
|
|
| T |
16232205 |
tatcatcagcgttataaccaatcctcgtcaaagcgggtgaaactcccttcacaattacttcatatctgtccttggagtatttcggtgtagtggcattcat |
16232304 |
T |
|
| Q |
217 |
ctgt |
220 |
Q |
| |
|
|||| |
|
|
| T |
16232305 |
ctgt |
16232308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 487
Target Start/End: Original strand, 33861045 - 33861227
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||||||||||| | || ||||| || |||||||||||||| |||| ||| |||| ||| ||||| |
|
|
| T |
33861045 |
aaataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttca |
33861144 |
T |
|
| Q |
405 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccct |
487 |
Q |
| |
|
|||||||| | || |||||||| ||| |||| ||| |||||||| | |||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
33861145 |
aaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccct |
33861227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 478
Target Start/End: Original strand, 16232380 - 16232552
Alignment:
| Q |
306 |
aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa |
405 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||||||| | ||||| ||||| ||||| | |||||| |||||||| || ||| |||| | |
|
|
| T |
16232380 |
aataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca |
16232479 |
T |
|
| Q |
406 |
aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaat |
478 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||| ||||||| ||| || || | |||||||||||||| |
|
|
| T |
16232480 |
aaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccgatgatcatgttcttaat |
16232552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 4619607 - 4619808
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||||||| | ||| ||||| |||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4619607 |
tcaagagcttcaagaagggtgggaccctcgtaccagtcaagattagaagaacgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaa |
4619706 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||| | ||||||||||||| | ||| |||| || ||||| | ||||||| ||||||||||||| ||| ||||| || |||| |||||||||||| |
|
|
| T |
4619707 |
tttttttagggttatagccaatcctctccaaaaagtgtgaaaaacctttcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccat |
4619806 |
T |
|
| Q |
217 |
ct |
218 |
Q |
| |
|
|| |
|
|
| T |
4619807 |
ct |
4619808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 17 - 479
Target Start/End: Original strand, 4297400 - 4297856
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||||||||||| ||| || ||||| || |||| ||||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
4297400 |
tcaatagcttcaagaagggtgggacccttgtaccagtcaaaattagtggagcggtcaatcaagttatctccgtcaaaactagagatgggaataaatggaa |
4297499 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
||| | ||| |||||||||||||| ||||||||| | |||||| || |||| | |||||||| || | ||||| || ||||||||||||||||| |
|
|
| T |
4297500 |
tttcatatggcttatagccaaccttgatcaaataggttaaaacttgctctgatatttttacatacctatccatggagtatttgggtgtagtggcatccat |
4297599 |
T |
|
| Q |
217 |
ctgttcacgatagcaagacaatgagaatttgta--taaataaagtaatcacagaaataatcaaatgc-atcttcaaagggctaaaacgttcaaatacctt |
313 |
Q |
| |
|
|||| || || ||| |||| |||| ||| || | ||| ||| | | |||||||||||| | ||||| || ||||||||| | |||||||||| |
|
|
| T |
4297600 |
ctgt----ga-agatagatgatgataattagtatttatacaaatgaattataaaaataatcaaatacaatcttaaacgggctaaaa-atacaaatacctt |
4297693 |
T |
|
| Q |
314 |
gttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccacc- |
412 |
Q |
| |
|
||||||||| || || ||||| ||| |||||||| |||| ||||||||||| |||||| |||||| ||| | |||||||||||||||||||| |
|
|
| T |
4297694 |
gttgcagcagcagataatttgattcgcaccaagattgaaggcaagaagagcatgttcaaaggtctgaccaatc------ataccggcttcaaaaccacca |
4297787 |
T |
|
| Q |
413 |
--ggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatg |
479 |
Q |
| |
|
|||||||||||||||| |||||| |||| | |||| |||| | |||||| |||||||||||||| |
|
|
| T |
4297788 |
gtagtagtggaatcaatgacgagaacatcacagttagctagggacgctccagtggtcatgttcttaatg |
4297856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 1846407 - 1846608
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||| || | |||| |||| || |||||||||||||| |||||||||| || | ||| |||| |
|
|
| T |
1846407 |
tcaagagcttcaagaagggtgggacccgtgtaccagtcaaggttagaagagtgctcaatgatgttatctccctcgtaaccagagatagggataaaaggaa |
1846506 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaaccttcttcaaataggatgaaacttccttcacaatttcttcatacctacccttcgagtacttaggtgtagtggcatccat |
216 |
Q |
| |
|
|||| |||||||||||||||||| ||||| ||| ||||| || ||||||||| |||||||||| |||| ||||| || ||||||||||||||||| |
|
|
| T |
1846507 |
ttttacctgggttatagccaacctcgctcaaaaagggtgaaatttgactcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccat |
1846606 |
T |
|
| Q |
217 |
ct |
218 |
Q |
| |
|
|| |
|
|
| T |
1846607 |
ct |
1846608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 4787772 - 4787648
Alignment:
| Q |
17 |
tcaagagcctcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaa |
116 |
Q |
| |
|
|||| ||| ||||||||||| |||||| | |||||||||| ||| || ||||| || |||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4787772 |
tcaatagcttcaagaagggtcggacccatttaccagtcaaaattagtggagcggtcaatcaagttatctccatcaaaactagagatgggaacaaatggaa |
4787673 |
T |
|
| Q |
117 |
ttttgtctgggttatagccaacctt |
141 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
4787672 |
tttcatttgggttatagccaacctt |
4787648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 4787536 - 4787429
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca |
404 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||| ||||||| |||| | |||||||||||| |
|
|
| T |
4787536 |
aaataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgaccattc------ataccggcttca |
4787443 |
T |
|
| Q |
405 |
aaaccaccggtagt |
418 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
4787442 |
aaaccaccagtagt |
4787429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 487
Target Start/End: Original strand, 1846670 - 1846783
Alignment:
| Q |
374 |
ggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc |
473 |
Q |
| |
|
|||||| |||| ||| ||| ||| |||||||||||||| | || || |||||||| ||||| ||||| ||||||| ||||| ||| || ||||||||| |
|
|
| T |
1846670 |
ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc |
1846769 |
T |
|
| Q |
474 |
ttaatgaaatccct |
487 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1846770 |
ttaatgaaatccct |
1846783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 4620026 - 4620078
Alignment:
| Q |
432 |
agaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatc |
484 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
4620026 |
agaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatc |
4620078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 4619893 - 4619959
Alignment:
| Q |
305 |
aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttca |
371 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||| || |||||||| | ||| |||||| |
|
|
| T |
4619893 |
aaataccttgttgtagcagcagatcatttgcttcacaccaagggttaaagcaaggacagcatgttca |
4619959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 39242622 - 39242500
Alignment:
| Q |
26 |
tcaagaagggtaggacccttgtaccagtcaagatttgtagagcgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctg |
125 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| ||||||||||| |||| ||||||||| | |||||||||||||||||||||| || ||||||||| |
|
|
| T |
39242622 |
tcaagaagggtgggactgttgtaccagtcaatattagtagagcgctcaatcaagttatctccgttaaaaccagagatgggaacaaatcgagttttgtctg |
39242523 |
T |
|
| Q |
126 |
ggttatagccaaccttcttcaaa |
148 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39242522 |
ggttatagccaaccttcttcaaa |
39242500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University