View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_high_14 (Length: 487)
Name: NF11207_high_14
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 51739473 - 51739037
Alignment:
| Q |
1 |
tcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaac |
100 |
Q |
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| T |
51739473 |
tcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaac |
51739374 |
T |
|
| Q |
101 |
cctgcctgtaattcaacaatgcaatcaatgcattaataattgaaaacttcaatgtaaa-taaataatgtaga---atgaaacaataactaatcaattacc |
196 |
Q |
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| T |
51739373 |
cctgcctgtaattcaacaatgcaatcaatgcattaataattgaaaacttcaattcaatgtaaataatgtagattaatgaaacaataactaatcaattacc |
51739274 |
T |
|
| Q |
197 |
agaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739273 |
agaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgcccattgagt |
51739174 |
T |
|
| Q |
297 |
atagagggttaactagttctttattacaaaacattttgtgtgtggcatccattgtgtgcatttaatgtgtttgtcaaaacttcaatcaataaattagaca |
396 |
Q |
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| T |
51739173 |
atagagggttaactagttctttattacaaaacattttgtgggtggcatccattgtgtggatttaatgtttttgtcaaaac-tcaatcaataaattagaca |
51739075 |
T |
|
| Q |
397 |
aagaaaggaatctgatatgaaattttacgttttaacaa |
434 |
Q |
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| T |
51739074 |
aagaaaggaatctgatatgaaattttacgttttaacaa |
51739037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 10199709 - 10199570
Alignment:
| Q |
191 |
attaccagaatttgtgcaacgggtccaggttgacctagggtcctaaggacaacgttgaagaagtgtgagacaacaagaatacatgacacttgcatgccca |
290 |
Q |
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| T |
10199709 |
attaccagaatttgtgcaatgggtccaggttggcccatagtcctaagaacaacgttgaagaagtgtgacacaacaagaatgcatgacacttgcataccca |
10199610 |
T |
|
| Q |
291 |
ttgagtatagagggttaactagttctttattacaaaacat |
330 |
Q |
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| T |
10199609 |
tagaacttagagggttaacaagatcatcgttacaaaacat |
10199570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 10200162 - 10200041
Alignment:
| Q |
2 |
cgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaacc |
101 |
Q |
| |
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||||||||||||||||| |||| |||||||| |||||| |||| ||||||||||| |||||||| || ||||||| |||||||| ||||||| ||||| |
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| T |
10200162 |
cgacaaaagaagctcactacttgatagtaatttatggaactggctggaaagaatgtctcttttatatatggaatatgagacattggacctaatatcaacc |
10200063 |
T |
|
| Q |
102 |
ctgcctgtaattcaacaatgcaat |
125 |
Q |
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| |||||| |||||||||||||| |
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| T |
10200062 |
cagcctgt--ttcaacaatgcaat |
10200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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