View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_high_19 (Length: 452)
Name: NF11207_high_19
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 142 - 441
Target Start/End: Complemental strand, 35232665 - 35232366
Alignment:
| Q |
142 |
cattttgatctattgccattattaatattttcagtcacatgttatcacattattaaaaactttgatttcaaaggttgttgtatataagtatattcatatt |
241 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
35232665 |
cattttgatctattgccattattaaaattttcagtcacatgttatcacattattaaaaactttgatttcaaaggtttttgtatataagtacatttatatt |
35232566 |
T |
|
| Q |
242 |
catcaaaccgcagtcctattttgtaaatgcggttgtacaacttgttcctatgtggtacagtgtacatgtttagtattagttacaagataagatttctgat |
341 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
35232565 |
catcagaccgcagtcctattttgtaaatgcggttgtacaacttgttcctatgtggtacagtgtacatgtttagtatcagttacaagataagattgcggat |
35232466 |
T |
|
| Q |
342 |
gttgatctaaaagcatgtctctcttccccaaagcttctctggtaggtaatctttcatgcaataatctctaggtaaaatttgccaaaatccctgccttcat |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||| |||| |||||||||| |
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| T |
35232465 |
tttgatctaaaagcatgtctctcttccccaaagcttctctggtaggtaacctttcatgcaataaattccaggcaaaatttgccacaatcgctgccttcat |
35232366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 29285081 - 29284955
Alignment:
| Q |
18 |
aaagagtgcacaacattttaagcgactattacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggcttgcttc |
117 |
Q |
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| T |
29285081 |
aaagagtgcacaatattttaagcgactattacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggcttgcttc |
29284982 |
T |
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| Q |
118 |
tcttcacaccagttgctttcttggcat |
144 |
Q |
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| T |
29284981 |
tcttcacaccagttgctttcttggcat |
29284955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 35232979 - 35232852
Alignment:
| Q |
18 |
aaagagtgcacaacattttaagcgact-attacaaaaaccagattttgggccacagttcgagcacttgcacgtggataggaagtaataataggcttgctt |
116 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35232979 |
aaagagtgcacaatattttaagcgactgattacaaaaaccagattttgggccacagttcgagcacttgcacatggataggaagtaataataggcttgctt |
35232880 |
T |
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| Q |
117 |
ctcttcacaccagttgctttcttggcat |
144 |
Q |
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| T |
35232879 |
ctcttcacaccagctgctttctttgcat |
35232852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 230 - 391
Target Start/End: Complemental strand, 29283754 - 29283596
Alignment:
| Q |
230 |
tatattcatattcatcaaaccgcagtcctattttgtaaatgcggttgtacaacttgttcctatgtggtacagtgtacatgtttagtattagttacaagat |
329 |
Q |
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|||||| |||||||||| ||| |||||| ||||||||| || ||||||||||||| ||||||||| |||||| |||||||||||||| |||||||||| |
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| T |
29283754 |
tatatttatattcatcagaccccagtccg-ttttgtaaaagcagttgtacaacttgctcctatgtgctacagtctacatgtttagtatctgttacaagat |
29283656 |
T |
|
| Q |
330 |
aagatttctgatgttgatctaaaagcatgtctctcttccccaaagcttctctggtaggtaat |
391 |
Q |
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| ||| ||| ||| ||||| || || ||||||||||||||||||||||| ||| ||||| |
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| T |
29283655 |
-atattgttgaagtt-atctagaatcacttctctcttccccaaagcttctctagtaagtaat |
29283596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 35235332 - 35235254
Alignment:
| Q |
259 |
attttgtaaatgcggttgtacaacttgttcctatgtggtacagtgtacatgtttagtattagttacaagataagatttc |
337 |
Q |
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||||||||||||| ||| |||||||||||| |||||| ||||||||||||| |||| || ||||| ||||||||||||| |
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| T |
35235332 |
attttgtaaatgcagttatacaacttgttcttatgtgctacagtgtacatgcttagcatcagttataagataagatttc |
35235254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 29286933 - 29286854
Alignment:
| Q |
259 |
attttgtaaatgcggttgtacaacttgttcctatgtggtacagtgtacatgtttagtattagtta-caagataagatttc |
337 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||| || ||||| ||||||||||||| |
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| T |
29286933 |
attttgtaaatgcagttgtagaacttgttcctatgtgctacagtgtacatgcttagcatcagttataaagataagatttc |
29286854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 26000073 - 26000001
Alignment:
| Q |
72 |
gttcgagcacttgcacgtggataggaagtaataataggcttgcttctcttcacaccagttgctttcttggcat |
144 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
26000073 |
gttcgagcacttgcccgtggatatgaagtaataatgggcttgctactcttcacaccagtagctttcttggcat |
26000001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 25999814 - 25999768
Alignment:
| Q |
170 |
tttcagtcacatgttatcacattattaaaa-actttgatttcaaagg |
215 |
Q |
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||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
25999814 |
tttcagtcacatgttgtcacattattaaaagagtttgatttcaaagg |
25999768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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