View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11207_high_3 (Length: 649)
Name: NF11207_high_3
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 34932801 - 34933098
Alignment:
| Q |
18 |
agaaaagcttgcctcggctttaaacacaggaatgttgtcgaacatgtgcgcaggagttattccgtgtgcgtatctcgatgggcatcccgctgagtatctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34932801 |
agaaaagcttgcctcggctttaaacacaggaaggttgtcgaacatgtgcgcaggagttattccgtgtgtgtatctcgatgggcatcccgctgagtatctc |
34932900 |
T |
|
| Q |
118 |
atctttgcgctatagatgttgaagatttgggagagagtcggcttcgcagataatatgaaagaacagaattgttagatggtaattagatgatgatgatgat |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34932901 |
atctttgcactatagatgttgaagatttgggagagagtcggcttcgcagataatatgaaagaacaaaattgttagatggtaattagatgatgatgatgat |
34933000 |
T |
|
| Q |
218 |
atgtactaattaattaaacacactctatcaaaactaatataaccattccatcaaagaagagaaaatcccgaattcataaggtttaaaccctaaccccc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34933001 |
atgtactaattaattaaacacactctatcaaaactaatataatcattccatcaaagaagagaaaatcccgaattcacaaggtttaaaccctaaccccc |
34933098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 397 - 649
Target Start/End: Original strand, 34933180 - 34933432
Alignment:
| Q |
397 |
acttacatacatacctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34933180 |
acttacatacatacctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag |
34933279 |
T |
|
| Q |
497 |
cctctctatttatgaatgaacatgtgccatttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcatgccttca |
596 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34933280 |
cctctctatttatgaatgaacatgtgccctttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcaagccttca |
34933379 |
T |
|
| Q |
597 |
ttacttgaaatcattccatgagagaacaacagaaagagacatatatgataatc |
649 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34933380 |
ttacttgaaatcattccatgagagaacaacagaaagagacatatatgataatc |
34933432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 412 - 492
Target Start/End: Original strand, 34926734 - 34926816
Alignment:
| Q |
412 |
tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc |
492 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
34926734 |
tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc |
34926816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 593
Target Start/End: Original strand, 34926842 - 34926885
Alignment:
| Q |
549 |
ctctcctgttcttttttgtaagtgtttttcattgttttcatgcct |
593 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34926842 |
ctctcctgttctttt-tgtaagtgtttttcattgttttcatgcct |
34926885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University