View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_high_36 (Length: 288)
Name: NF11207_high_36
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 51190941 - 51190672
Alignment:
| Q |
1 |
agagttaccaaaaggtgttactccaagtaaaggtgttgtaataatagtactttccataatgtttttcctaacttttatcttacttgtatatgtcaaattc |
100 |
Q |
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| T |
51190941 |
agagttaccaaaaggtgttactccaagtaaaggtgttgtaataatagtactttccataatgtttttcctaacttttatcttacttgtatatgtcaaattc |
51190842 |
T |
|
| Q |
101 |
tgtcgtgttactcctattcatcttctaaacccaaactctcttaatcttcaaaacaatctaggacaaactcgatcgaggtctataaattctggcgttgaac |
200 |
Q |
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| T |
51190841 |
tgtcgtgttactcctattcatcttctaaacccaaactctcttaatcttcaaaacaatctaggacaaactcgatcgaggtctataaattctggcgttgaac |
51190742 |
T |
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| Q |
201 |
aaaaagtaattgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51190741 |
aaaaagtaattgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatg |
51190672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 33512353 - 33512414
Alignment:
| Q |
209 |
attgaaacacttcctttcttcaaattctcttctttaaaaggatccaaacaaggcttagaatg |
270 |
Q |
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| T |
33512353 |
attgaatcacttccttttttcaaattctcttctctcaaaggttcaaaacaagggttggaatg |
33512414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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