View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11207_high_42 (Length: 255)

Name: NF11207_high_42
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11207_high_42
NF11207_high_42
[»] chr1 (15 HSPs)
chr1 (4-245)||(47987295-47987536)
chr1 (5-217)||(49441112-49441325)
chr1 (7-206)||(49541249-49541448)
chr1 (5-217)||(48178495-48178719)
chr1 (8-205)||(41185162-41185359)
chr1 (7-145)||(45195912-45196050)
chr1 (8-199)||(49286568-49286759)
chr1 (5-91)||(40026361-40026447)
chr1 (8-217)||(2418531-2418731)
chr1 (7-124)||(33859650-33859767)
chr1 (7-124)||(33921156-33921273)
chr1 (9-91)||(40140119-40140201)
chr1 (161-217)||(33859879-33859935)
chr1 (161-217)||(33920988-33921044)
chr1 (172-205)||(45196083-45196116)
[»] chr5 (2 HSPs)
chr5 (7-215)||(31265939-31266147)
chr5 (17-139)||(1205162-1205284)
[»] chr3 (8 HSPs)
chr3 (7-202)||(14963454-14963649)
chr3 (5-146)||(563630-563771)
chr3 (5-146)||(530564-530705)
chr3 (5-139)||(486515-486649)
chr3 (5-132)||(573373-573500)
chr3 (36-139)||(38867316-38867419)
chr3 (36-146)||(541331-541441)
chr3 (5-146)||(553527-553668)
[»] chr7 (3 HSPs)
chr7 (7-218)||(32348176-32348381)
chr7 (12-136)||(25837832-25837956)
chr7 (9-69)||(25866385-25866445)
[»] chr4 (2 HSPs)
chr4 (5-217)||(55773118-55773330)
chr4 (5-217)||(55837329-55837541)
[»] chr6 (3 HSPs)
chr6 (35-146)||(3047466-3047577)
chr6 (36-139)||(34605095-34605198)
chr6 (36-139)||(34726372-34726475)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 47987536 - 47987295
Alignment:
Q  4 gtgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttac 103  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  47987536 gtgggatgtgcttgatatcatttccaaaacactagattttgtcgaccactttcaatttgctggtgtgtgcaagaattggaggacatttcataaaatttac 47987437  T
Q  104 tcgagaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47987436 tcgagaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgtcatcctaagggatcattttcctttattagcatacccaaccaaaaagttt 47987337  T
Q  204 attgctcgaagatggggaagtacgtctttcactctgcctatg 245  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  47987336 attgctcgaagatggggaagtacttcttccactctgcctatg 47987295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 49441325 - 49441112
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattgga-ggacttttcataaaacttac 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||| || |||||| ||||| ||||    
T  49441325 tgggatgtgcttgatatcatttccaaaacactagattttgacgacctctttcagtttgccggtgtgtgcaagaattggaggggcttttcgtaaaatttac 49441226  T
Q  104 tcgagaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagttt 203  Q
    | ||||||||||||||||||||||||||| ||| ||||||||||||| | | ||  | | |||||| ||||| ||| |||||||||||| ||||||||||    
T  49441225 tggagaaatttcttggcatcccaagaaccattaattcttcaaatttcatatgatggttacggatcaatttcccttagtagcatacccgaacaaaaagttt 49441126  T
Q  204 attgctcgaagatg 217  Q
    |||||| |||||||    
T  49441125 attgcttgaagatg 49441112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 49541448 - 49541249
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||| |||||||||||| ||| | |    
T  49541448 ggatgtccttgatatcattttcaaaacattagattttgacgacctctttcaatttgatggagtgtgtaagaattggagggcttttcataaaatttattgg 49541349  T
Q  107 agaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagtttatt 206  Q
    ||| |||||||||||||||||||||| |||||||||||| |||||| | ||  ||| | ||||| |||||||||| ||||  ||||||||||| ||||||    
T  49541348 agagatttcttggcatcccaagaaccattacttcttcaagtttcgtatcatggtaatgaatcatattcctttattcgcatgtccgaccaaaaaatttatt 49541249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 48178495 - 48178719
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||||||||||||||||| ||||||||| ||||||||||||| | |||| ||||| | |||||| |||| ||||||||| ||||| |||||| || |     
T  48178495 tgggatgtgcttgatatcatatccaaaacactagattttgacgatctctttgaattttccggtgtgagcaaaaattggagggctttttataaaatttgcc 48178594  T
Q  105 cgagaaatttcttggc------------atcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccga 192  Q
     |||||||||||||||            |||||||||||| ||||||||||||||||||| |  |     |||||||||||||||||||||||||||  |    
T  48178595 ggagaaatttcttggcatccttcttggaatcccaagaaccattacttcttcaaatttcgtatcgtgacgggggatcattttcctttattagcatacctaa 48178694  T
Q  193 ccaaaaagtttattgctcgaagatg 217  Q
    ||||||||||||||||| |||||||    
T  48178695 ccaaaaagtttattgcttgaagatg 48178719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 41185162 - 41185359
Alignment:
Q  8 gatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcga 107  Q
    |||||| |||||| || || ||||||| |||||||||||||||  ||| | ||| |||| ||||||||||||||||||| ||||||||||  ||| | ||    
T  41185162 gatgtgtttgatagcacttgcaaaacactagattttgacgacctattttagttttctggcgtgtgcaagaattggaggatttttcataaattttattgga 41185261  T
Q  108 gaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagtttat 205  Q
    ||||||| ||||||||||||||||| ||||||||||| || | |  ||||  |||| | |  | |||||||||||||||||||||||||||| |||||    
T  41185262 gaaattttttggcatcccaagaaccattacttcttcagatattgccttatgataagagttattattcctttattagcatacccgaccaaaaattttat 41185359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 45195912 - 45196050
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    ||||||| |||||||||||| ||||||  |||||||||| ||||||||||||||| | ||||| ||||||||||||||| |||||||||||| ||| | |    
T  45195912 ggatgtgtttgatatcattttcaaaactctagattttgatgaccactttcaattttccggtgtatgcaagaattggagggcttttcataaaatttattgg 45196011  T
Q  107 agaaatttcttggcatcccaagaacctttacttcttcaa 145  Q
    |||| ||| ||| |||| |||||||| ||||||||||||    
T  45196012 agaatttttttgacatctcaagaaccattacttcttcaa 45196050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 49286568 - 49286759
Alignment:
Q  8 gatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcga 107  Q
    ||||||||||||||||||||| |||||||||||||||| |||   |||   || || |||||||| ||||||||||||||||||||||||| | |   ||    
T  49286568 gatgtgcttgatatcatttcccaaacattagattttgatgactttttttggttagccggtgtgtggaagaattggaggacttttcataaaattcatcgga 49286667  T
Q  108 gaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaa 199  Q
    ||||||| |||||||| |||||||| ||| |||||||| |||| | | ||  ||   ||||| ||||| |||| ||||||||||||||||||    
T  49286668 gaaattttttggcatcgcaagaaccattaattcttcaagtttcttatgatgttattcgatcactttccattatcagcatacccgaccaaaaa 49286759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 40026361 - 40026447
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggactttt 91  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||| | ||||||||||||||||||| |||||    
T  40026361 tgggatgtgcttaatatcatttccaaaacattagattttgacgatctctttcagtttgccgttgtgtgcaagaattggagggctttt 40026447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 2418731 - 2418531
Alignment:
Q  8 gatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcga 107  Q
    ||||||||||||||||||||||||||| ||||||||||||| | |||||  ||||| |||||||||||| ||||||||  |||         ||| | ||    
T  2418731 gatgtgcttgatatcatttccaaaacactagattttgacgatctctttcggtttgccggtgtgtgcaagcattggagggtttt---------ttattgga 2418641  T
Q  108 gaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagtttattg 207  Q
    |||||||  ||||||| |||||||| |||||||||||| |||||| | ||| ||||| ||||| ||||||| ||||| |    ||||||||  |||||||    
T  2418640 gaaatttactggcatcgcaagaaccgttacttcttcaagtttcgtataatcataaggaatcatattcctttgttagcttgtttgaccaaaagatttattg 2418541  T
Q  208 ctcgaagatg 217  Q
    || |||||||    
T  2418540 cttgaagatg 2418531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 33859650 - 33859767
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    ||||||||||||||||||||  ||||||||| |||||||||| | |||| |  |||| ||||| |||||| ||||||||  ||||||||||| ||||| |    
T  33859650 ggatgtgcttgatatcatttttaaaacattaaattttgacgatctcttttagattgccggtgtatgcaaggattggagggtttttcataaaatttactgg 33859749  T
Q  107 agaaatttcttggcatcc 124  Q
    ||||||||||||| ||||    
T  33859750 agaaatttcttggaatcc 33859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 33921273 - 33921156
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    ||||||||||||||||||||  ||||||||| |||||||||| | |||| |  |||| ||||| |||||| ||||||||  ||||||||||| ||||| |    
T  33921273 ggatgtgcttgatatcatttttaaaacattaaattttgacgatctcttttagattgccggtgtatgcaaggattggagggtttttcataaaatttactgg 33921174  T
Q  107 agaaatttcttggcatcc 124  Q
    ||||||||||||| ||||    
T  33921173 agaaatttcttggaatcc 33921156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 40140119 - 40140201
Alignment:
Q  9 atgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggactttt 91  Q
    |||| ||||||||||||||||||||| ||||||||||||| | |||||  ||| | ||||||||||||||||||||| |||||    
T  40140119 atgtacttgatatcatttccaaaacactagattttgacgatctctttcggttttccggtgtgtgcaagaattggagggctttt 40140201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 33859879 - 33859935
Alignment:
Q  161 aagggatcattttcctttattagcatacccgaccaaaaagtttattgctcgaagatg 217  Q
    |||||||||| |||||||||||||||| || |||||||| ||||||||| |||||||    
T  33859879 aagggatcatgttcctttattagcatatccaaccaaaaaatttattgcttgaagatg 33859935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 33921044 - 33920988
Alignment:
Q  161 aagggatcattttcctttattagcatacccgaccaaaaagtttattgctcgaagatg 217  Q
    |||||||||| |||||||||||||||| || |||||||| ||||||||| |||||||    
T  33921044 aagggatcatgttcctttattagcatatccaaccaaaaaatttattgcttgaagatg 33920988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 45196083 - 45196116
Alignment:
Q  172 ttcctttattagcatacccgaccaaaaagtttat 205  Q
    ||||||||||||||||||||||||||||||||||    
T  45196083 ttcctttattagcatacccgaccaaaaagtttat 45196116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 31265939 - 31266147
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||| ||| | |    
T  31265939 ggatgtgcttgatataatttctaaaacactagattttgacgaccactttcagtttggcggtgtgtgcaagaattggagggcttttcataaaaattattgg 31266038  T
Q  107 agaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagtttatt 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||| | | ||| || || ||||| ||| ||||||| ||||||  |||||||||||||||    
T  31266039 agaaatttcttggcatcccaagaaccattacttcttcaaatttcttataatcgtagggcatcatattcttttattatcatacctaaccaaaaagtttatt 31266138  T
Q  207 gctcgaaga 215  Q
    ||| |||||    
T  31266139 gctagaaga 31266147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 1205284 - 1205162
Alignment:
Q  17 gatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttct 116  Q
    ||||||||||| ||||   || ||||||| |||| ||||||||||| |  |||||||||||||||| ||   |||||||||| ||| | ||||||||||     
T  1205284 gatatcatttctaaaatgctaaattttgatgacctctttcaatttggtaatgtgtgcaagaattggtggcaatttcataaaatttattggagaaatttca 1205185  T
Q  117 tggcatcccaagaacctttactt 139  Q
    ||||||| |||||| | ||||||    
T  1205184 tggcatctcaagaatcattactt 1205162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 14963454 - 14963649
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |||  | || |    
T  14963454 ggatgtgcttgatattattttcaaaaccttagattttgacgaccactttcagtttgccgatgtgtgcaagaattggaggacttttcatgaaagctgctgg 14963553  T
Q  107 agaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagtt 202  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||  |  || ||||| ||||||||||||| |||| ||||||||||||    
T  14963554 agaaatttcttggcatcccaagaaccattacttcttcaaatttcgtatcatgattgggaatcatattcctttattagcgtaccagaccaaaaagtt 14963649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 563771 - 563630
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||| |||||||||||||||| | || | ||||||||||||||| |||| |||||||||||||||||||||||||||||   |||||||||| ||| |    
T  563771 tgggatttgcttgatatcatttctagaaaactagattttgacgacctctttgaatttgctggtgtgtgcaagaattggagggaatttcataaaatttatt 563672  T
Q  105 cgagaaatttcttggcatcccaagaacctttacttcttcaaa 146  Q
     ||||||||||||||||||  ||||||| |||||| ||||||    
T  563671 tgagaaatttcttggcatctgaagaaccattacttgttcaaa 563630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 530705 - 530564
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||| |||||||||| ||||| | || | | ||||||||||||| |||| |||||||||||||||||||||||||||||   |||||||||  ||| |    
T  530705 tgggatttgcttgatatgatttctagaaaacttgattttgacgacctctttgaatttgctggtgtgtgcaagaattggagggaatttcataaattttatt 530606  T
Q  105 cgagaaatttcttggcatcccaagaacctttacttcttcaaa 146  Q
     ||||||||||||||||||  ||||||| |||||| ||||||    
T  530605 ggagaaatttcttggcatctgaagaaccattacttgttcaaa 530564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 486649 - 486515
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||| |||||||| ||||||||| |    ||||||| || |||| |||||||||| |||| ||||||||||||||||||   ||||||||||||||||    
T  486649 tgggatatgcttgatgtcatttccagagatctagatttcgatgacctctttcaattttctggcgtgtgcaagaattggagggagtttcataaaacttact 486550  T
Q  105 cgagaaatttcttggcatcccaagaacctttactt 139  Q
     || ||| |||||||||||||||||||| ||||||    
T  486549 ggaaaaagttcttggcatcccaagaaccattactt 486515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 573500 - 573373
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||| |||||||| ||||||||| |    ||||||| || |||| ||||||||| ||||||||||||||||||||||||   |||||||||||||| |    
T  573500 tgggatatgcttgatgtcatttccagagatctagatttcgatgacctctttcaattcgctggtgtgtgcaagaattggagggaatttcataaaacttatt 573401  T
Q  105 cgagaaatttcttggcatcccaagaacc 132  Q
     || ||| |||||||||| |||||||||    
T  573400 ggaaaaagttcttggcattccaagaacc 573373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 38867419 - 38867316
Alignment:
Q  36 tagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttcttggcatcccaagaaccttt 135  Q
    ||||||||||||| | ||| ||||||| | ||||||||||||||||| || | |||||||||| ||| | ||| |||||| |||||| ||||||||| ||    
T  38867419 tagattttgacgatctcttccaatttggtagtgtgtgcaagaattggcgggcatttcataaaatttattggaggaatttcatggcattccaagaaccatt 38867320  T
Q  136 actt 139  Q
    ||||    
T  38867319 actt 38867316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 541441 - 541331
Alignment:
Q  36 tagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttcttggcatcccaagaaccttt 135  Q
    ||||||| || |||| ||||||||| ||||||||||||||||||||||||   ||||| |||||||| | || ||| || |||||||| | |||||| ||    
T  541441 tagatttcgatgacctctttcaattcgctggtgtgtgcaagaattggagggaatttcaaaaaacttattggaaaaagtttttggcatcaccagaaccatt 541342  T
Q  136 acttcttcaaa 146  Q
    |||| ||||||    
T  541341 acttattcaaa 541331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 553668 - 553527
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||| |||||||| ||||||||| |    ||||||| || |||| ||||||||| ||||| ||||||||||||||||||   |||||||||| ||| |    
T  553668 tgggatatgcttgatgtcatttccagagatctagatttcgatgacctctttcaattcgctggggtgtgcaagaattggagggaatttcataaaatttatt 553569  T
Q  105 cgagaaatttcttggcatcccaagaacctttacttcttcaaa 146  Q
     || ||| |||||||||  ||| ||||| |||||| ||||||    
T  553568 ggaaaaagttcttggcactccaggaaccattacttattcaaa 553527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 32348381 - 32348176
Alignment:
Q  7 ggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcg 106  Q
    |||||||||||||||||||||| ||||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||| | |    
T  32348381 ggatgtgcttgatatcatttccgaaacactagatttcgatgaccactttcagtttgccggtgtgtgcaagaattggagggcttttcataaaatttattgg 32348282  T
Q  107 agaaatttcttggcatcccaagaacctttacttcttcaaatt--tcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagttta 204  Q
    |||||||||||| | ||||||||||| |||||||||||||||  ||||| |||        ||||| ||||||||| | ||||| |||||||||||||||    
T  32348281 agaaatttcttgacgtcccaagaaccattacttcttcaaattcatcgtggtat--------atcatattcctttataaacatactcgaccaaaaagttta 32348190  T
Q  205 ttgctcgaagatgg 218  Q
    ||||| ||||||||    
T  32348189 ttgcttgaagatgg 32348176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 25837956 - 25837832
Alignment:
Q  12 tgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaa 111  Q
    |||| |||||||||||||| |   ||||||| || || | ||||||||||||||| || |||||||  ||||||   |||||||||| |||||  | |||    
T  25837956 tgctagatatcatttccaagaatctagatttcgatgatctctttcaatttgctggcgtatgcaagagctggagggaatttcataaaatttactgcataaa 25837857  T
Q  112 tttcttggcatcccaagaaccttta 136  Q
    |||  |||||||||||| |||||||    
T  25837856 ttttctggcatcccaagcaccttta 25837832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 25866445 - 25866385
Alignment:
Q  9 atgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgt 69  Q
    |||||||||||| ||||||   || | ||||||||||||| || |||||||||||||||||    
T  25866445 atgtgcttgataccatttctcgaaaactagattttgacgatcaatttcaatttgctggtgt 25866385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 55773118 - 55773330
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||||| |||||||||||||||||| |  |||| ||||| || | ||||||||||||| ||||||| |||||||||||| | ||||||||||  || |    
T  55773118 tgggatgttcttgatatcatttccaaatctctagactttgatgatctctttcaatttgcttgtgtgtgtaagaattggagggcatttcataaaatgtatt 55773217  T
Q  105 cgagaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagttta 204  Q
     |||||||||||||||||  |||||||| |||||| ||||||  || |  | |   |||  ||| ||||||||||| ||||||||  |||||||||||||    
T  55773218 ggagaaatttcttggcattacaagaaccattacttgttcaaaagtcttcctttttcaagaaatctttttcctttatcagcatacctaaccaaaaagttta 55773317  T
Q  205 ttgctcgaagatg 217  Q
    | |||| ||||||    
T  55773318 tcgctcaaagatg 55773330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 55837329 - 55837541
Alignment:
Q  5 tgggatgtgcttgatatcatttccaaaacattagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttact 104  Q
    |||||||| |||||||||||||||||| |  |||| ||||| || | ||||||||||||| ||||||| |||||||||||| | ||||||||||  || |    
T  55837329 tgggatgttcttgatatcatttccaaatctctagactttgatgatctctttcaatttgcttgtgtgtgtaagaattggagggcatttcataaaatgtatt 55837428  T
Q  105 cgagaaatttcttggcatcccaagaacctttacttcttcaaatttcgtgttatcctaagggatcattttcctttattagcatacccgaccaaaaagttta 204  Q
     |||||||||||||||||  |||||||| |||||| ||||||  || |  | |   |||  ||| ||||||||||| ||||||||  |||||||||||||    
T  55837429 ggagaaatttcttggcattacaagaaccattacttgttcaaaagtcttcctttttcaagaaatctttttcctttatcagcatacctaaccaaaaagttta 55837528  T
Q  205 ttgctcgaagatg 217  Q
    | |||| ||||||    
T  55837529 tcgctcaaagatg 55837541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 3047466 - 3047577
Alignment:
Q  35 ttagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttcttggcatcccaagaacctt 134  Q
    ||||||||||| |||| ||||||||||| | | |||||||| |||||| |||  |||||||||| ||| | ||| ||||   |||||||||||||||| |    
T  3047466 ttagattttgatgacctctttcaatttggtagcgtgtgcaacaattggcggaaatttcataaaatttattggaggaattatatggcatcccaagaaccat 3047565  T
Q  135 tacttcttcaaa 146  Q
    ||||||| ||||    
T  3047566 tacttctccaaa 3047577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 34605095 - 34605198
Alignment:
Q  36 tagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttcttggcatcccaagaaccttt 135  Q
    |||||||||| |||| ||||||||||| | |||| ||||| |||||| |    |||||||||| ||| | ||| |||||| |||||||| ||||||| ||    
T  34605095 tagattttgatgacctctttcaatttggtagtgtatgcaaaaattggcgagaatttcataaaatttattggaggaatttcatggcatccgaagaaccatt 34605194  T
Q  136 actt 139  Q
    ||||    
T  34605195 actt 34605198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 34726372 - 34726475
Alignment:
Q  36 tagattttgacgaccactttcaatttgctggtgtgtgcaagaattggaggacttttcataaaacttactcgagaaatttcttggcatcccaagaaccttt 135  Q
    |||||||||| |||| ||||||||||| | |||| ||||| |||||| |    |||||||||| ||| | ||| |||||| |||||||| ||||||| ||    
T  34726372 tagattttgatgacctctttcaatttggtagtgtatgcaaaaattggcgagaatttcataaaatttattggaggaatttcatggcatccgaagaaccatt 34726471  T
Q  136 actt 139  Q
    ||||    
T  34726472 actt 34726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University