View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_high_45 (Length: 250)
Name: NF11207_high_45
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 12744743 - 12744972
Alignment:
| Q |
15 |
acacacaagtctaaat-ctcaaatttaaatccacattaaaatgtctaacctaataatatctacattaccaaccaagctaggttggagtcgagtgaaaaaa |
113 |
Q |
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| T |
12744743 |
acacacaagtctaaaggctcaaatttaaatccacattaaaatgtctaacctaataatatctacattaccaaccaagctaggttggagtcgagtgaaaaaa |
12744842 |
T |
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| Q |
114 |
ttataattaccacaactttcttatgtaatttagtcaaattgaattttatgtttagagaaggatgtactataataggccaagatatatggatgtagtatct |
213 |
Q |
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| T |
12744843 |
ttgtaattaccacaactttcttatgtaatttagtcaaattgaattttatgtttagagaggaatgtactagaataggccaatatatatggatgtagtatgt |
12744942 |
T |
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| Q |
214 |
tacctttcagaatcaatctattttcatctc |
243 |
Q |
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| T |
12744943 |
tacctttcagaatcaatctattctcatctc |
12744972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 12755733 - 12755962
Alignment:
| Q |
15 |
acacacaagtctaaat-ctcaaatttaaatccacattaaaatgtctaacctaataatatctacattaccaaccaagctaggttggagtcgagtgaaaaaa |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12755733 |
acacacaagtctaaaggctcaaatttaaatccacattaaaatgtctaacctaataatatctacattaccaaccaagctaggttggagtcgagtgaaaaaa |
12755832 |
T |
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| Q |
114 |
ttataattaccacaactttcttatgtaatttagtcaaattgaattttatgtttagagaaggatgtactataataggccaagatatatggatgtagtatct |
213 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||||||| | |
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| T |
12755833 |
ttgtaattaccacaactttcttatgtaatttagtcaaattgaattttatgtttagagaggaatgtactagaataggccaatatatatggatgtagtatgt |
12755932 |
T |
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| Q |
214 |
tacctttcagaatcaatctattttcatctc |
243 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
12755933 |
tacctttcagaatcaatctattctcatctc |
12755962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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