View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_high_55 (Length: 222)
Name: NF11207_high_55
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 14136032 - 14135844
Alignment:
| Q |
19 |
gtgtgtacttcaagacaaatcaagagttgtgtcgaccaaatatctacttctaaacaaatcataagtttttataccgtctaaatctgcacttacaatatca |
118 |
Q |
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| T |
14136032 |
gtgtgtacttcaagacaaatcaagagttgtgtcgaccaaatatctacttctaaacaaatcataagtttttataccgtctaaatctgcacttacaatatca |
14135933 |
T |
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| Q |
119 |
tgtgatttgttagacatgtgggtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctttg |
207 |
Q |
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| T |
14135932 |
tgtgatttgttagacatgtgggtgtgtttgatggtcaggatagaaaatcaggataggaaaaatatatcatatcttgttttaatcctttg |
14135844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 4044157 - 4044090
Alignment:
| Q |
140 |
gtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctttg |
207 |
Q |
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| T |
4044157 |
gtgcgtttgatggttaggatagagagtcaggataagaaatatatatcatatcctgttttaatcttttg |
4044090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 17828930 - 17828863
Alignment:
| Q |
138 |
gggtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctt |
205 |
Q |
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| T |
17828930 |
gggtgcgtttgatggtcaggatagagagtcaggatatgaaagatatatcatattatgttttaatcctt |
17828863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 24429443 - 24429385
Alignment:
| Q |
144 |
gtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatc |
202 |
Q |
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| T |
24429443 |
gtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatc |
24429385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 40619896 - 40619840
Alignment:
| Q |
138 |
gggtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctg |
194 |
Q |
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| T |
40619896 |
gggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctg |
40619840 |
T |
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