View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_1 (Length: 776)
Name: NF11207_low_1
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_1 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 15 - 750
Target Start/End: Original strand, 23467350 - 23468079
Alignment:
| Q |
15 |
cacagatgaggaagaaagcctttgacagctttaacaagatacgagcaatgattatgatgataatcagtgttatcactgatatagcagcgagtatattcac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
23467350 |
cacagatgaggaagaaagcctttgacagctttaacaaaatacgtgcaatgattatgatgataatcagtgttaccactgatatagcagcgattatattcac |
23467449 |
T |
|
| Q |
115 |
tctcttatcttccatatcagaacttcacattttatgttgtatgataaagatggaatggaagataaaagataaattattagatttctcacctttgtaatat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23467450 |
tctcttatcttccatatcagaacttcacattttatgttttatgataaagatggaatggaagataaaagttgaattattagatttctcacctttgtaatat |
23467549 |
T |
|
| Q |
215 |
tcttgtgagaacatgaagagttgaatagttcatcaactttgcttgcaattacagataaaggatgttcaactttcatttgaatatatttaactaaaacaaa |
314 |
Q |
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|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23467550 |
tcttgtgagaacatgaagagttgattagttcagcagttttgcttgcaattacagataaaagatgttcaactttcatttgaatatatttaactaaaacaaa |
23467649 |
T |
|
| Q |
315 |
gcgtggaccatttccactttcaaaacctctaaaaatttaaaatatttggtagattataaacagaatacatattcatatacactttctagtaaataatgaa |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23467650 |
gcgtggaccatttccactttcaaaacctctaaaaatttaaaatattttgtagattataaacagaatacatattcatatacactttctagtaaataatgaa |
23467749 |
T |
|
| Q |
415 |
cttattcaaatacattgcttttccactcaaaggcaaataagac--tgaaatttgtgtagatttacaactttataaaaaattagtgcggagaaaatggcaa |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23467750 |
cttattcaaatacattgcttttccactcaaaggcaaataagactgtgaaatttgtgtagatttacaactttataaaaaattagtgcggagaaaatggcaa |
23467849 |
T |
|
| Q |
513 |
ttgggaccaaagcatactcaacatttatgtgatttagaattaacacataacataaacactatcaaaataataggtaagctgaaacaaaaattcccccaac |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23467850 |
ttgggaccaaagcatactcaacatttatgtgatttagaattaacacat------aacactatcaaaataataggtaagctgaaacaaaaattcccccaac |
23467943 |
T |
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| Q |
613 |
atgcaagtagctcacgagcaacaataatatggcagcaaatacaacaaaacaaacgcacaagtggtatagaaattannnnnnngaggtagtggccggggtt |
712 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||| || ||| |
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| T |
23467944 |
atgcaagtagctcacgagcaacaataatatggcagcaaataaaacaaaacaaacgcacaagtggcatagatattattttttt--ggtagtggcaggagtt |
23468041 |
T |
|
| Q |
713 |
tgaagtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
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||||||||||| || ||||| ||||||||||||||| |
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| T |
23468042 |
tgaagtttgaacccccaaccttgcatatattatgcatt |
23468079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 750
Target Start/End: Original strand, 346126 - 346159
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
346126 |
gtttgaaccctggaccttacatatattatgcatt |
346159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 717 - 759
Target Start/End: Complemental strand, 37921805 - 37921763
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcattctccttact |
759 |
Q |
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| T |
37921805 |
gtttgaatcccggaccttgcatatattatgcattgtccttact |
37921763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 750
Target Start/End: Complemental strand, 31214694 - 31214660
Alignment:
| Q |
716 |
agtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
31214694 |
agtttgaatcccggaccttacatatattatgcatt |
31214660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 750
Target Start/End: Complemental strand, 46903968 - 46903934
Alignment:
| Q |
716 |
agtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
46903968 |
agtttgaaccctggaccttacatatattatgcatt |
46903934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 750
Target Start/End: Original strand, 5428438 - 5428471
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
5428438 |
gtttgaatcctggaccttgcatatattatgcatt |
5428471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 758
Target Start/End: Original strand, 61572 - 61613
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcattctccttac |
758 |
Q |
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||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
61572 |
gtttgaaccctggaccttacatacattatgcattatccttac |
61613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 758
Target Start/End: Original strand, 27833403 - 27833444
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcattctccttac |
758 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||| |
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| T |
27833403 |
gtttgaaccccggaccttacatatattatgcattgtccttac |
27833444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 750
Target Start/End: Original strand, 34448612 - 34448645
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcatt |
750 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
34448612 |
gtttgaaccctggaccttacatatattatgcatt |
34448645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 758
Target Start/End: Original strand, 37944132 - 37944173
Alignment:
| Q |
717 |
gtttgaatcctggaccttacatatattatgcattctccttac |
758 |
Q |
| |
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||||||| |||||| ||||||||||||||||||| ||||||| |
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| T |
37944132 |
gtttgaaccctggatcttacatatattatgcattatccttac |
37944173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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