View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_11 (Length: 517)
Name: NF11207_low_11
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 6411357 - 6410941
Alignment:
| Q |
1 |
taaacagatgagtatcgagatatagagaggtgagattcaactgacgcacatgaaaacgattagtaataatgtcaaagcagatgatgaaatgaa---aggg |
97 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6411357 |
taaacagatgagtatcgagatatagagaggtgagattcaactgaccgacatgaaaacgattagtaataatgtcaaagcagatgatgaaatgaagaaaggg |
6411258 |
T |
|
| Q |
98 |
agggagcctagggaatcattatcacagataggatatattgtgatgaccaagcaagacttagacgaggttctgattgagttctaagttctaactactgcca |
197 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6411257 |
agggagcctagggaatc---------gatatgatatattgtgatgaccaagcaagacttagacgaggttctgattgagttctaagttctaaccactgcca |
6411167 |
T |
|
| Q |
198 |
caacaggatttgtacagcaggtagcagatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccact |
297 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6411166 |
caacaggatttgtgcagcaggtagcagatacgctaacaaacataatattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccact |
6411067 |
T |
|
| Q |
298 |
caccatctaatgcaatgcatgattgtaggttgtagaaaatgtaatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaacacaaca |
397 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6411066 |
caccatctaatgcaatgcatgattgtaggttgtataaaatgtaatgcacaacgaaggaacaaataactctaacaaacagataaatgaaacaaacacaaca |
6410967 |
T |
|
| Q |
398 |
gttttccatgttggacatatcgattg |
423 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
6410966 |
gttttccatgttggacatatcgattg |
6410941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 6410944 - 6410900
Alignment:
| Q |
452 |
attgataaagtaaaaacatacaaaacataacaggaaccgaagttt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410944 |
attgataaagtaaaaacatacaaaacataacaggaaccgaagttt |
6410900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 195 - 410
Target Start/End: Original strand, 4967698 - 4967914
Alignment:
| Q |
195 |
ccacaacaggatttgtacagcaggtagcagatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaacc |
294 |
Q |
| |
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|||||||| |||||| |||||||||||||||| ||||||||||||| |||||| | ||| |||||| ||||| |||||||||||||||||||||| || |
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| T |
4967698 |
ccacaacaagatttgcgcagcaggtagcagatatgctaacaaacatactattgactgggtatacatctgaatacttattccaatcttagaaaaccaatcc |
4967797 |
T |
|
| Q |
295 |
actcaccatctaatgcaatgcatgattgta---ggttgtagaaaatgtaatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaac |
391 |
Q |
| |
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||| |||| ||||||||| | |||||| | ||||||| |||||||||||||||| |||| ||| || |||| |||||| |||||||||||||||| |
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| T |
4967798 |
actaaccacctaatgcaaagtatgattattatgggttgtataaaatgtaatgcacaatgaagtaaccaacaactctaacaagcagataaatgaaacaa-- |
4967895 |
T |
|
| Q |
392 |
acaacagttttccatgttg |
410 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
4967896 |
acaacagtttttcatgttg |
4967914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 214 - 410
Target Start/End: Original strand, 9819270 - 9819466
Alignment:
| Q |
214 |
gcaggtagcagatacgctaacaaacatagtattgagttagtaaacatctaaatacatattccaatcttagaaaaccaaaccactcaccatctaatgcaat |
313 |
Q |
| |
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|||| ||| ||||| ||||| ||||||| |||||| | | | ||||| |||||| ||||||||||| |||||||||||| ||| |||||||| ||||| |
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| T |
9819270 |
gcagctagtagatatgctaaaaaacatactattgactaggcatacatcaaaatacttattccaatctcagaaaaccaaacaactaaccatctagcgcaat |
9819369 |
T |
|
| Q |
314 |
gcatgattgtaggttgtagaaaatgtaatgcacaacgaaggaacaaataactttaacaaacagataaatgaaacaaacacaacagttttccatgttg |
410 |
Q |
| |
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||||| | || | |||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9819370 |
gcatggtcgtggactgtataaaatgtaatgcacaacaaaggaaccaacgactttaacaaacagataaatgaaacaaacacaacagtttttcatgttg |
9819466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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