View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_18 (Length: 453)
Name: NF11207_low_18
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 265 - 438
Target Start/End: Original strand, 14628683 - 14628856
Alignment:
| Q |
265 |
caaccatacatggatgggagagtaactcttttcatgctcatgtctaaacgctatacattgcttgtatcaatggtatttgggaggtaataagcagaggcaa |
364 |
Q |
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| T |
14628683 |
caaccatacatggatgggagagtaactcttttcatgctcatgtctaaacgctatacattgcttgtatcaatggtatttgggaggtaataagcagaggcaa |
14628782 |
T |
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| Q |
365 |
tatgatgctcagtagaaggaagacaacggtttatagaatatttacactatcacccacttttcagcaaactttgt |
438 |
Q |
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| T |
14628783 |
tatgatgctcagtagaaggaagacaacggtttatagaatatttacactatcacccacttttcagcaaactttgt |
14628856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 14628432 - 14628618
Alignment:
| Q |
14 |
gcagagattgtcgtttcgtccaacactatcagtgtaaannnnnnnnattcatacattcattcaataatgtgatatcaaatgatttaatgattttaaacac |
113 |
Q |
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| T |
14628432 |
gcagatattgtcgtttcgttcaacactatcggtgtaaattttttttattcatacattcattcaataatgtgctatcaaatgatttaatgattttaaacac |
14628531 |
T |
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| Q |
114 |
ataatattgatgtgtcaaacaatcatttgatgcatttataaagtattcttacattgataatgtaaacaagttaaatcaaattgatat |
200 |
Q |
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| T |
14628532 |
ataatattgatgtgtcaaacaatcatttgatgcatttataaagtattcttacattgataatgtaaacaagttaaatcaaattgatat |
14628618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 14636597 - 14636637
Alignment:
| Q |
398 |
tagaatatttacactatcacccacttttcagcaaactttgt |
438 |
Q |
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| T |
14636597 |
tagaatatttacactatcacccacttttcaacaaactttgt |
14636637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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