View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_2 (Length: 675)
Name: NF11207_low_2
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 17 - 657
Target Start/End: Complemental strand, 42324696 - 42324056
Alignment:
| Q |
17 |
gacatcaaaagttccacctccaagatcaaagacaagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtaggttcgtta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324696 |
gacatcaaaagttccacctccaagatcaaagacaagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtaggttcgtta |
42324597 |
T |
|
| Q |
117 |
atgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcattgaagtaagctgtaaattcaaaagaagaccaga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324596 |
atgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcattgaagtaagctgtaaattcaaaagaagaccaga |
42324497 |
T |
|
| Q |
217 |
aacgttaaaatgaagacaaaatggggaagaaaataatcaaattgcatgaggaacaagttgtaattcacctgggacagtgaccacggcatcacgaatagtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324496 |
aacgttaaaatgaagacaaaatggggaagaaaataatcaaattgcatgaggaacaagttgtaattcacctgggacagtgaccacggcatcacgaatagtc |
42324397 |
T |
|
| Q |
317 |
ttgccaaggaatgcttcagcggtttccttcatcttagtcagaatcatggcactgacttcctcagggctgaacaccttggtctcaccatcctttactctga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324396 |
ttgccaaggaatgcttcagcggtttccttcatcttagtcagaatcatggcactgacttcctcagggctgaacaccttggtctcaccatcctttactctga |
42324297 |
T |
|
| Q |
417 |
cctgaatgtatggttttccatccttgttgacaatcttgtaaggaacaagcttcatgtctctttgaacttctttatccgcaaatctgaagaaagaaacaac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324296 |
cctgaatgtatggttttccatccttgttgacaatcttgtaaggaacaagcttcatgtctctttgaacttctttatccgcaaatctgaagaaagaaacaac |
42324197 |
T |
|
| Q |
517 |
tcggtcaacattgatcccgttacatcaaattaacaaatattagtcattataaacggcaaacatatagaatgatgtcttactttcttccaataagtctctt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42324196 |
tcggtcaacattgatcccgttacatcaaattaacaaatattagtcattataaactgcaaacatatagaatgatgtcttactttcttccgataagtctctt |
42324097 |
T |
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| Q |
617 |
gacatcaaagatggtcctttcagggttgacagctgccagat |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42324096 |
gacatcaaagatggtcctttcagggttgacagctgccagat |
42324056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 283 - 657
Target Start/End: Complemental strand, 42272290 - 42271912
Alignment:
| Q |
283 |
acctgggacagtgaccacggcatcacgaatagtcttgccaaggaatgcttcagcggtttccttcatcttagtcagaatcatggcactgacttcctcaggg |
382 |
Q |
| |
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||||||||| |||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||| |||| |||||||||| |
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| T |
42272290 |
acctgggacggtgaccacagcatcacgaatagttttgccaaggaatccttcggcggtttccttcatcttaccgagaatcatggcgctgatttcctcaggg |
42272191 |
T |
|
| Q |
383 |
ctgaacaccttggtctcaccatcctttactctgacctgaatgtatggttttccatccttgttgacaatcttgtaaggaacaagcttcatgtctctttgaa |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272190 |
ctgaacaccttggtctcaccatcctttactctaacctgaatgtatggttttccatctctgttgacaatcttgtaaggaacaagcttcatgtctctttgaa |
42272091 |
T |
|
| Q |
483 |
cttctttatccgcaaatctgaagaaagaaacaactcggtcaacattgatcccgttacatcaaat--taacaaat-attagtc--attataaacggcaaac |
577 |
Q |
| |
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|||| ||||| |||||||||| | ||||||||||| |||| ||||||| | ||| |||||| ||| |||| |||| || || ||||| | || |
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| T |
42272090 |
cttccttatcttcaaatctgaaaacagaaacaactcagtcactattgatcacattaattcaaattataaaaaataattaatcatatcataaatgaataaa |
42271991 |
T |
|
| Q |
578 |
atatagaatgatgtcttactttcttccaataagtctcttgacatcaaagatggtcctttcagggttgacagctgccagat |
657 |
Q |
| |
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|||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
42271990 |
atat-caataaggtcttactttcttccgataagtctcttgacatcaaagatggtcctttcgggattgacagctgccagat |
42271912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 42272573 - 42272393
Alignment:
| Q |
17 |
gacatcaaaagttccacctccaagatcaaagacaagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtaggttcgtta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
42272573 |
gacatcaaaagttccacctccaagatcaaagacgagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtgggttcatta |
42272474 |
T |
|
| Q |
117 |
atgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcattgaagtaagctgta |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42272473 |
atgattctagccacattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcattaaagtaagctgta |
42272393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 23587658 - 23587585
Alignment:
| Q |
84 |
ccataagcaatggcagcagcggtaggttcgttaatgattctagccacattcaaaccagcaatgacaccggcatc |
157 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||| ||||| |||||| | |||| ||||||||||||||| |
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| T |
23587658 |
ccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatc |
23587585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 36880991 - 36881021
Alignment:
| Q |
165 |
gcctgcctctgagcatcattgaagtaagctg |
195 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36880991 |
gcctgcctctgagcatcattgaagtaagctg |
36881021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 8017281 - 8017227
Alignment:
| Q |
141 |
gcaatgacaccggcatccttggtggcctgcctctgagcatcattgaagtaagctg |
195 |
Q |
| |
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|||||||||||||||||||| ||||| || | ||| | ||||||||||||||||| |
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| T |
8017281 |
gcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctg |
8017227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 8590926 - 8590992
Alignment:
| Q |
129 |
acattcaaaccagcaatgacaccggcatccttggtggcctgcctctgagcatcattgaagtaagctg |
195 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||| || | |||||||| |||||| || ||||||| |
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| T |
8590926 |
acattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctg |
8590992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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