View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_21 (Length: 436)
Name: NF11207_low_21
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 28639051 - 28639277
Alignment:
| Q |
31 |
aattgttcattaatacttaataattgttcaaaactctatcgcaatagatgttattttttaaagtagaagctcaccatagaaataatcatttgattcgtgt |
130 |
Q |
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| T |
28639051 |
aattgttcattaatacttaataattgttcaaaactctatcacaatagatgttactttttaaagtagaagctcaccatagaaataatcatttgattcgtgt |
28639150 |
T |
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| Q |
131 |
tggttcgacaaaaacaaaaattattatgtataactccaaagacttgatctaatgatnnnnnnnnnnnnnnnnnnnnntagattttaaatctaaaggtctc |
230 |
Q |
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| T |
28639151 |
tggttcaacaaaaacaaaaattattatgtataactccaaagatttgatctaatgataaaaaataaaataaaaaaaattagattttaaatctaaaggtctc |
28639250 |
T |
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| Q |
231 |
aagtctgagcctcactaatgcatttag |
257 |
Q |
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| T |
28639251 |
aagtccgagcctcactaatgcatttag |
28639277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 28742762 - 28742928
Alignment:
| Q |
19 |
tatgcatggttaaattgttcattaatacttaataattgttcaaaactctatcgcaatagatgttattttttaaagtagaagctcaccatagaaataatca |
118 |
Q |
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| T |
28742762 |
tatgcatggttaa-ttgttcattaatacttaataattgttcaaaactctatcacaatagatgttattttttaaagtagaagctcaccatagaaataatca |
28742860 |
T |
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| Q |
119 |
tttgattcgtgttggttcgacaaaaacaaaaattattatgtataactccaaagacttgatctaatgat |
186 |
Q |
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| T |
28742861 |
tttgattcgtgttggttcaacaaaaacaaaaattattatgtataatttcaaagacttgatctaatgat |
28742928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 209 - 344
Target Start/End: Original strand, 28742954 - 28743090
Alignment:
| Q |
209 |
agattttaaatctaaaggtctcaagtctgagcctcactaatgcatttagaggaaagtaaatgtaaacatctttataaatattc-tttaagttcgaaggtt |
307 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
28742954 |
agattttaaatttaaaggtctcaagtccgagcctcactaatgcatttagaggaaagtaaatgtaaacatctttataaatactcttttaagttcgaaggtc |
28743053 |
T |
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| Q |
308 |
ttcgttgccttggaatgtggcaccatcctttcatcct |
344 |
Q |
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| T |
28743054 |
ttcattgccttagaatgtggcaccatcctttcatcct |
28743090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 28640077 - 28640167
Alignment:
| Q |
254 |
ttagaggaaagtaaatgtaaacatctttataaatattctttaagttcgaaggttttcgttgccttggaatgtggcaccatcctttcatcct |
344 |
Q |
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| T |
28640077 |
ttagaggaaagtaaatgtaaacatctttataaatactctttaagttcgaaggtcttcattgccttggaatgtggcaccatactttcttcct |
28640167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 28743114 - 28743163
Alignment:
| Q |
367 |
ttaatatgtatgcctcaaaattcacattcacactgtgacttaacatattt |
416 |
Q |
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| T |
28743114 |
ttaatatgtatgcctcaaaattcacattcacactgtgacttaacatattt |
28743163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 28640178 - 28640219
Alignment:
| Q |
367 |
ttaatatgtatgcctcaaaattcacattcacactgtgactta |
408 |
Q |
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| T |
28640178 |
ttaatatgtatgcctcaaaattcacgttcacactgtgactta |
28640219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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