View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_24 (Length: 425)
Name: NF11207_low_24
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 39613838 - 39613444
Alignment:
| Q |
17 |
aacacccggtcaccccttccttgccgtcgtctccgtcccatatctcgtcatccacatccattcacgtagcatttaagcttatactaaaaagagtgttgaa |
116 |
Q |
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| T |
39613838 |
aacacccggtcaccccttccttaccgtcgtctccgtcccatatttcgtcatccacatccattcacgtagcttttaagcttatactaaaaagagtgttgaa |
39613739 |
T |
|
| Q |
117 |
gtgtttgatagcatacacaccactgagtgtgtataatattccttgatcaagatttcaatcccaaataacaaaattaatatcaattttaactcttctaaaa |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
39613738 |
gtgtttgatagcatacacaccactgagagtgtataatattcctt-atcaagatttcaatcccaaataacaaaattaatatcaattttgactcctctaaaa |
39613640 |
T |
|
| Q |
217 |
atgatatcaaaatatacacttgaacgcgacttttagtcatgtttataatggtgcataccttgaggtctaatatagtttattggtgtacatgtttacatat |
316 |
Q |
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|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39613639 |
atgaaatcaaaatatgcacttgaacg-gacttttagtcatgtttataatggtgcataccttgaggtctaatatagtttattggtgtacatgtttacatat |
39613541 |
T |
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| Q |
317 |
gatgtaagtgttttttagacatgatgtgtgaatccgtaaatattagaatactgaatttgattcctactaataacaaaatatactatgcgtctctgct |
413 |
Q |
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||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39613540 |
gatatgagtgttttttagacatgatgtgtgagtccgtaaatattagaatactgaatttgattcctactaataacaaaatatactatgcgtgtctgct |
39613444 |
T |
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