View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_25 (Length: 381)
Name: NF11207_low_25
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 31998341 - 31998109
Alignment:
| Q |
12 |
aagaattaatcaattagttctgaaaattttaatttaaaaaatgtgaaatttgttttcagtttgtcattcgattt--attatatgttttgggtacacgata |
109 |
Q |
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| T |
31998341 |
aagaattaatcaattagttctgaaaattttaatttaaaaaatgtgaaatttgtttccagtttgtcattcgatttttattatatgttttgggtacacaata |
31998242 |
T |
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| Q |
110 |
gaattggttgaatgtaatactggagtgaaaaacgtgatttgatgtttttatgttgtttggctagataaagtcaaagaaattttgtcatccaaaattgatt |
209 |
Q |
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| T |
31998241 |
gaattggttgaatgtaatactggagtaaaaaacgtgatttgatgtttttatgttgtttggctagataaagtcaaagaaattttgtcatccaaaatttatt |
31998142 |
T |
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| Q |
210 |
cttgtagaagcgtattttgagcttttacgagtt |
242 |
Q |
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| T |
31998141 |
cttgtagaaccgtattttgagcttttacgagtt |
31998109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 31997589 - 31997467
Alignment:
| Q |
244 |
agacaaagtaaattgattctagttggacactaatatatatttttt-actattaactttaagtgcccctataaatttattatctaaaattgaatcacaaat |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31997589 |
agacaaagtaaattgattctagttggacactaatatatatttttttactattaactttaagtgcccctataaatttattatctaaaattgaatcacaaat |
31997490 |
T |
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| Q |
343 |
tgatctacatctattgcaaagat |
365 |
Q |
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| T |
31997489 |
ttatctacatctattgcaaagat |
31997467 |
T |
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