View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11207_low_26 (Length: 375)
Name: NF11207_low_26
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_26 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 24860307 - 24860678
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860307 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
24860406 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860407 |
cctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
24860506 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860507 |
ttcgtgaaatcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctt |
24860606 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcatctcactcg |
372 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
24860607 |
tgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcg |
24860678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 34748516 - 34748875
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
34748516 |
gcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccggtggagtgaagaaa |
34748615 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|||||||||||| | || ||||||||||| || || || ||||| |||||||| || ||||| || || |||||||| ||||| || ||||| ||||| | |
|
|
| T |
34748616 |
cctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctgg |
34748715 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||||||||||||||| ||| || || || || |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34748716 |
ttcgtgagatcgctcaggatttcaagactgatctccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctt |
34748815 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatat |
360 |
Q |
| |
|
||||||||||||||| || || |||||||| ||| | || || || ||||| |||||||| |
|
|
| T |
34748816 |
tgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatat |
34748875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
266 |
caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga |
357 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||||||||| |||||| | || ||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 40045370 - 40045461
Alignment:
| Q |
266 |
caagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaagga |
357 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||||||||||| |||||| | |||||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
40045370 |
caagaggctgctgaggcatatcttgttggtctctttgaggacactaacttgtgcgctatccatgccaagcgagttactattatgcccaagga |
40045461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 44771153 - 44771102
Alignment:
| Q |
184 |
tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctc |
235 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctc |
44771102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 53290720 - 53290832
Alignment:
| Q |
224 |
aaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta |
323 |
Q |
| |
|
|||||||||||| | ||||| || | || |||||| ||||||||| ||| | |||||||||||| ||||| | ||||| |||||||||||||| | | |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
324 |
ttcatgctaagag |
336 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53290820 |
ttcatgctaagag |
53290832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 21317336 - 21317697
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||||| ||||||||||| | |
|
|
| T |
21317336 |
caaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc |
21317435 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt |
201 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||||||||||||| || |
|
|
| T |
21317436 |
cacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgt |
21317535 |
T |
|
| Q |
202 |
tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactcttt |
301 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||| | |||||||| || |||||||| |||||||||||||| |||||||||||||| ||||| | ||| |
|
|
| T |
21317536 |
tcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgttt |
21317635 |
T |
|
| Q |
302 |
gaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21317636 |
gaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattca |
21317697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 2 - 363
Target Start/End: Complemental strand, 3930327 - 3929966
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| |||| || || || || |||||||| | ||||| || || || ||||| || || ||||||| |
|
|
| T |
3930327 |
caaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccggtggtgtaaagaaac |
3930228 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt |
201 |
Q |
| |
|
| ||| | |||||||| ||||| ||||||||||| || ||||||||||| || || ||||| || |||||||| | ||||||||||||||| | | || |
|
|
| T |
3930227 |
cacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggt |
3930128 |
T |
|
| Q |
202 |
tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactcttt |
301 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| || || |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| | ||| |
|
|
| T |
3930127 |
tcgtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgttt |
3930028 |
T |
|
| Q |
302 |
gaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|| ||||| || ||||| || |||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3930027 |
gaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattca |
3929966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 361
Target Start/End: Complemental strand, 3928858 - 3928616
Alignment:
| Q |
119 |
ggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag |
218 |
Q |
| |
|
||||| |||||| | || |||||| | ||||| ||||| | ||| ||||||||||| | |||||||| ||| || | | |||| |||||||||||| | |
|
|
| T |
3928858 |
ggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcagg |
3928759 |
T |
|
| Q |
219 |
atttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttg |
318 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||| |||||||||||| |||||||| | | | ||||| | ||||| |||| || ||||| |
|
|
| T |
3928758 |
atttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttg |
3928659 |
T |
|
| Q |
319 |
cgctattcatgctaagagagttaccattatgcccaaggatatt |
361 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
3928658 |
tgctattcatgctaagagagttactattgtgcctaaggatatt |
3928616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 30774 - 31134
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || ||||| ||||||||||| | |
|
|
| T |
30774 |
caaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagc |
30873 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt |
201 |
Q |
| |
|
| ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| |||||||||||| || |
|
|
| T |
30874 |
cacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgt |
30972 |
T |
|
| Q |
202 |
tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactcttt |
301 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
30973 |
tcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgttt |
31072 |
T |
|
| Q |
302 |
gaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
31073 |
gaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattca |
31134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 13576110 - 13576471
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
13576110 |
caaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccggaggagtgaagaagc |
13576209 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt |
201 |
Q |
| |
|
| || ||||||||||| ||||||||||| ||||| |||||||||||||| || || ||||| ||||||||||| | || |||||||||||| | | || |
|
|
| T |
13576210 |
cacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggt |
13576309 |
T |
|
| Q |
202 |
tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactcttt |
301 |
Q |
| |
|
||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
13576310 |
tcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgttt |
13576409 |
T |
|
| Q |
302 |
gaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
13576410 |
gaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattca |
13576471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 363
Target Start/End: Complemental strand, 34571641 - 34571451
Alignment:
| Q |
173 |
atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaag |
272 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||| | || |||||||| || ||| ||| ||||| |||| |
|
|
| T |
34571641 |
atccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaag |
34571542 |
T |
|
| Q |
273 |
ctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
| || ||||| ||| | ||||| | ||||||||||| || | || || |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34571541 |
cagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattca |
34571451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 34562721 - 34562657
Alignment:
| Q |
299 |
tttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||||||||||| || | || || |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34562721 |
tttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattca |
34562657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34579281 - 34579050
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| ||||||| ||||||| || || |||||||||||||| || || ||||| || || || ||||| | ||| | ||||||||| | ||||| |
|
|
| T |
34579281 |
gcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaag |
34579182 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
||||| |||| ||||| ||||| || || ||||| || || || ||||| || || | || || ||| | || || |||||||||||||| ||||| | |
|
|
| T |
34579181 |
cctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttg |
34579082 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagat |
232 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||| |
|
|
| T |
34579081 |
ttcgtgaaattgctcagaatttcaagacagat |
34579050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34585030 - 34584799
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| ||||||| ||||||| || || |||||||||||||| || || ||||| || || || ||||| | ||| | ||||||||| | ||||| |
|
|
| T |
34585030 |
gcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcgaaaatctgtgccaacaaccggcggaatcaagaag |
34584931 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
||||| |||| ||||| ||||| || || ||||| || || || ||||| || || | || || ||| | || || |||||||||||||| ||||| | |
|
|
| T |
34584930 |
cctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttg |
34584831 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagat |
232 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||| |
|
|
| T |
34584830 |
ttcgtgaaattgctcagaatttcaagacagat |
34584799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 12531253 - 12531624
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
12531253 |
gcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaag |
12531352 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|| ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| || | || ||||||||||| | || | |
|
|
| T |
12531353 |
ccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttg |
12531452 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
12531453 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtt |
12531552 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattcatctcactcg |
372 |
Q |
| |
|
||| |||||||| || || || |||||||||||||| ||||| || ||||| ||||||||||| ||| |||| |
|
|
| T |
12531553 |
tgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
12531624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 12547366 - 12547004
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
12547366 |
gcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaag |
12547267 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|| ||| | |||||||| ||||| || |||||||| || |||||||||||||| || ||||| |||||||| || | || ||||||||||| | || | |
|
|
| T |
12547266 |
ccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttg |
12547167 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
12547166 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtt |
12547067 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||| |||||||| || || || |||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
12547066 |
tgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca |
12547004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 351
Target Start/End: Complemental strand, 9867024 - 9866674
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||| | ||| |||| || |||||||| || |||||||| ||||| || || || ||||||||||| | |
|
|
| T |
9867024 |
caaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagc |
9866925 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaag--taccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctc |
199 |
Q |
| |
|
| |||||||||||||| |||||||| || ||||| || ||||| ||| |||||||| |||| |||||||| | | || ||||| || || | || |
|
|
| T |
9866924 |
cacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttcttaa--ggaagcttccgtttcagagactg |
9866827 |
T |
|
| Q |
200 |
gttcgtga-aatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactc |
298 |
Q |
| |
|
| | | || ||| | |||||||| || ||||| | ||| ||||||| | |||||| |||||||||||||||||| ||| ||||| ||||| | |
|
|
| T |
9866826 |
atctgagggaaacgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttg |
9866727 |
T |
|
| Q |
299 |
tttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcc |
351 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
9866726 |
tttgaagatactaacctttgtgctattcatgctaagagagttactattatgcc |
9866674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 9870003 - 9870102
Alignment:
| Q |
262 |
tcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatatt |
361 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| | ||| | |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9870003 |
tcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 9894642 - 9894752
Alignment:
| Q |
239 |
ttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagag |
338 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||| || |||||||| | | ||| | | ||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
9894642 |
ttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgag |
9894741 |
T |
|
| Q |
339 |
ttaccattatg |
349 |
Q |
| |
|
|||| |||||| |
|
|
| T |
9894742 |
ttactattatg |
9894752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 38735501 - 38735625
Alignment:
| Q |
224 |
aaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgcta |
323 |
Q |
| |
|
|||||||||||| | ||||| || | ||||||||| ||||||||| ||| ||||| |||||| ||||| | ||||| |||||||||||||| ||| |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
324 |
ttcatgctaagagagttaccattat |
348 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttacaattat |
38735625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 9869866 - 9869946
Alignment:
| Q |
91 |
agtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct |
171 |
Q |
| |
|
|||||||||||| ||| ||||| ||| |||||||| || ||||| || ||||| |||||||| || ||||| |||||||| |
|
|
| T |
9869866 |
agtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttct |
9869946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 12538678 - 12538730
Alignment:
| Q |
320 |
gctattcatgctaagagagttaccattatgcccaaggatattcatctcactcg |
372 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || | |||||| |||||||| |
|
|
| T |
12538678 |
gctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcg |
12538730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 363
Target Start/End: Complemental strand, 43480040 - 43479679
Alignment:
| Q |
2 |
caaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaac |
101 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||||||| || || || || |||||||| |||||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
43480040 |
caaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccggaggagtgaagaagc |
43479941 |
T |
|
| Q |
102 |
ctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgt |
201 |
Q |
| |
|
| ||| | |||||||| ||||| || || ||||| || ||||||||||| || || || || |||||||||||| | || |||||||||||| | | || |
|
|
| T |
43479940 |
cacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggt |
43479841 |
T |
|
| Q |
202 |
tcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactcttt |
301 |
Q |
| |
|
| | ||||||||||| ||||||||||| |||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | ||| |
|
|
| T |
43479840 |
tagggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgttt |
43479741 |
T |
|
| Q |
302 |
gaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
43479740 |
gaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattca |
43479679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 26591929 - 26592291
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| || ||||| |||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
26591929 |
gcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccggcggagtgaagaag |
26592028 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|| ||||||||| | || |||||||||||||| || || |||||||||||||| || ||||| || |||||||| || |||||||| ||||| ||||| | |
|
|
| T |
26592029 |
ccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttg |
26592128 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||||||||| ||||| ||||| || || || |||||||| || || |||||||| |||||| | || |
|
|
| T |
26592129 |
ttcgtgagattgctcaggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtt |
26592228 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||| || ||||| ||||||||||| |
|
|
| T |
26592229 |
tgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattca |
26592291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 38799256 - 38799618
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || || || |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
38799256 |
gcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaag |
38799355 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|| || | ||| | || ||||| || || | | || ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38799356 |
ccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttg |
38799455 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
38799456 |
ttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctt |
38799555 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||| || || |||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
38799556 |
tgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca |
38799618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 38822261 - 38821899
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || || || |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
38822261 |
gcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaag |
38822162 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
|| || | ||| | || ||||| || || | | || ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38822161 |
ccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttg |
38822062 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
38822061 |
ttcgtgaaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctt |
38821962 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||| || || |||||||| || |||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
38821961 |
tgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattca |
38821899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 25865461 - 25865823
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || || |||||||||||||| || || || ||||| || ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
25865461 |
gcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccggcggagtgaagaag |
25865560 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
||||| |||| ||||| |||||||| || ||||| || ||||| ||||| || || || || |||||| | ||||| || ||||||||||| ||||| | |
|
|
| T |
25865561 |
cctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttg |
25865660 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| | || |||||| |||||| || ||||| ||||||||||| |||||||| || ||| | || |
|
|
| T |
25865661 |
ttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtt |
25865760 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
|||||||||||| | || || |||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
25865761 |
tgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattca |
25865823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 41943705 - 41944067
Alignment:
| Q |
1 |
gcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || || || ||||||||||| || || || || || || || ||||| ||||| | ||||| ||||| |||||| |
|
|
| T |
41943705 |
gcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccggtggagtcaagaaa |
41943804 |
T |
|
| Q |
101 |
cctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcg |
200 |
Q |
| |
|
||||| || | ||||| || ||||| |||||||| || ||||| || ||||| || || || || ||| | ||||| || ||||||||||||||||| | |
|
|
| T |
41943805 |
cctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttg |
41943904 |
T |
|
| Q |
201 |
ttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttggactctt |
300 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||| | |||||||| |||||| || ||||| ||||| || ||||||||||| |||||| | || |
|
|
| T |
41943905 |
ttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtt |
41944004 |
T |
|
| Q |
301 |
tgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||||||||| || | || || |||||||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
41944005 |
tgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattca |
41944067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
263 |
cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
362 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||| | ||||||||||| || | || ||||||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
363 |
a |
363 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 38807046 - 38807119
Alignment:
| Q |
290 |
gttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattca |
363 |
Q |
| |
|
||||| ||||||||||| || || | ||||| |||||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattca |
38807119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 27440875 - 27440951
Alignment:
| Q |
218 |
gatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg |
294 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||| |||||||||||||| || ||||||||| ||||| |
|
|
| T |
27440875 |
gatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttgg |
27440951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 7594236 - 7594136
Alignment:
| Q |
263 |
cttcaagaagctgctgaagcttatctcgttggactctttgaggatactaacctttgcgctattcatgctaagagagttaccattatgcccaaggatattc |
362 |
Q |
| |
|
||||| ||||| ||||| ||||| || |||||| | |||||||| || || || || || |||||||||||||| || || |||||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
| Q |
363 |
a |
363 |
Q |
| |
|
| |
|
|
| T |
7594136 |
a |
7594136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 17769312 - 17769236
Alignment:
| Q |
218 |
gatttcaaaacagatctccgtttccagagtagcgctgtttccgctcttcaagaagctgctgaagcttatctcgttgg |
294 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||||| |||||||||||||| || ||||||||| ||||| |
|
|
| T |
17769312 |
gatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttgg |
17769236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 7594487 - 7594402
Alignment:
| Q |
140 |
atccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
225 |
Q |
| |
|
||||| |||||||| || || || |||||| | ||||| || |||||||| || ||||| || |||||||| |||||||||||||| |
|
|
| T |
7594487 |
atccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 18492741 - 18492793
Alignment:
| Q |
173 |
atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
225 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
18492741 |
atccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaa |
18492793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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