View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_28 (Length: 354)
Name: NF11207_low_28
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 14176798 - 14176444
Alignment:
| Q |
1 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta----- |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176798 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatgg |
14176699 |
T |
|
| Q |
96 |
-tgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176698 |
atgatgatctctgcttgatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatca |
14176599 |
T |
|
| Q |
195 |
accctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
294 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14176598 |
accccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
14176499 |
T |
|
| Q |
295 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14176498 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
14176444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 28609078 - 28609432
Alignment:
| Q |
1 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta----- |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609078 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatgg |
28609177 |
T |
|
| Q |
96 |
-tgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatca |
194 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609178 |
atgatgatctctgcttaatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatca |
28609277 |
T |
|
| Q |
195 |
accctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
294 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28609278 |
accccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
28609377 |
T |
|
| Q |
295 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28609378 |
gaatagcagaatctgacatagtttcttgcttatgaaacactacatctctgcttct |
28609432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 12933528 - 12933174
Alignment:
| Q |
1 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta----- |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933528 |
attggattttatctttatgagtttgaacttcatcgaaactgtccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggtagatgg |
12933429 |
T |
|
| Q |
96 |
-tgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatca |
194 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933428 |
atgatgatctctgcttgatctcctgagatgagatgttgtggattgctctccatcttgaacatcttcatcatcaccatcttcaactactggctcaccatca |
12933329 |
T |
|
| Q |
195 |
accctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
294 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933328 |
accccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
12933229 |
T |
|
| Q |
295 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
349 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12933228 |
gaatagtagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
12933174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 15299318 - 15298964
Alignment:
| Q |
1 |
attggattttatccttatgagtttgaacttcatcgaaactttccggctccccctcatcagtgatgaggatgtactccgaactagggtacctggta----- |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
15299318 |
attggattttatccttatgagtttgaacttcatcaaaacttttcggctccccctcaacagtgatgagaatgtactccaaactagggtacctggtagatgg |
15299219 |
T |
|
| Q |
96 |
-tgatgatctctgcttgatctcctgagctgagatgttggggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatca |
194 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | |
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|
| T |
15299218 |
atgatgatctctgcttgatctcttgagctgagatgttgggcattgctctccatcctgaacatcttcctcatcaccatcttcaactactaactcaccatta |
15299119 |
T |
|
| Q |
195 |
accctagggtcttcatcaagatatcccccttctgtagcaactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttcta |
294 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15299118 |
accccagggtcttcatcaagatctcccccttctgtggcaactcttacaggaggagtggtaactgtaagatcaaccttaccataacgtttaggtgtttctg |
15299019 |
T |
|
| Q |
295 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299018 |
gaatagcagaatctgacatagtttcttgctcatgaaacactacatctctgcttct |
15298964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 133 - 333
Target Start/End: Original strand, 38994875 - 38995074
Alignment:
| Q |
133 |
gggattgctctccatcctgaacatcttcatcatcaccatcttcaactactggctcaccatcaaccctagggtcttcatcaagatatcccccttctgtagc |
232 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||||||||| | ||||||||||||||||||||||| || |||||||| |||||||||| | || |
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|
| T |
38994875 |
gggattgctctccatcctatcctttttcgtcatcaccatcttcaattgttggctcaccatcaaccctagggttttaatcaagatctcccccttctttggc |
38994974 |
T |
|
| Q |
233 |
aactcttacaggaggggtggtaagtgtaagatcaaccttaccataacgtttaggtgtttctagaatagcagaatctgacatagtttcttgctcatgaaac |
332 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||||||||||| | ||||||||||| |||||| | ||| || |||||||||||||||||||||| |
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|
| T |
38994975 |
aactcttataggaggagtggttagtgtaaggtcaaccttaccaccgtgcttaggtgtttcaggaatagta-aatttgtcatagtttcttgctcatgaaac |
38995073 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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