View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_29 (Length: 350)
Name: NF11207_low_29
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_29 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 10074048 - 10074372
Alignment:
| Q |
10 |
gcaaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtc |
109 |
Q |
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| T |
10074048 |
gcaaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctctgcttcagaatgacataaagggcaggaggtgtc |
10074147 |
T |
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| Q |
110 |
tagaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtgcttt- |
208 |
Q |
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|||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10074148 |
tagaacaatacctttcctctgttggttgtgtctatttgggagaatgttctttgccaagcgccacatgaagtttttgatcttgttggggattggtgctttg |
10074247 |
T |
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| Q |
209 |
-----------ccatagtctttcgttcctgtgatgggatggtccgggctggagattttctttgattttgttcaa-aagaggtatgctgatctgatctgac |
296 |
Q |
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| T |
10074248 |
caaatttcattccatagtctttcgttcctgcgttgggatggtcctagctgaagattttctctgattctgctcaataagtggtatgctg------------ |
10074335 |
T |
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| Q |
297 |
agtgtagcaaccatttttctcccagtgccagcaaatctt |
335 |
Q |
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| T |
10074336 |
--tgtagcaaccatttttctcccagcgccagcaaatctt |
10074372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 10136100 - 10136199
Alignment:
| Q |
11 |
caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtc |
109 |
Q |
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| T |
10136100 |
caaaggcgatgcaaacatagctagtttggacaaattacagttcatcaaataaatgtgccacagtctcagcttcagaatgacataaagggccggaggtgtc |
10136199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 10356562 - 10356479
Alignment:
| Q |
11 |
caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaa-taaatgttccacagtctcagcttcagaatgacata |
93 |
Q |
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| T |
10356562 |
caaaggcgatgcaaacatagctagtttggacaaattacagttcatcaaataaatgttccacagtctcagcttcagaatgacata |
10356479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 36092081 - 36091917
Alignment:
| Q |
47 |
acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt |
146 |
Q |
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|||||||||||||| |||||||||||| || | |||| |||||||| |||||| | ||||| || ||||||||||||||| || || || |||||| |
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| T |
36092081 |
acagttcatgaatagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagggaaatacctttcctctgcagattttgcctagtt |
36091982 |
T |
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| Q |
147 |
gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattggtgctttcca |
211 |
Q |
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| T |
36091981 |
gggaggatgttctttgccaagcgccacatgaagttcttcaccttgttgggaattgatgccttcca |
36091917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 31699751 - 31699572
Alignment:
| Q |
11 |
caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtct |
110 |
Q |
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||||||||| ||||||| ||| |||||||| | ||| || |||||||| ||||||||| |||| || | |||||| ||||| | ||||| |||||||| |
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| T |
31699751 |
caaaggcgaagcaaacaatgccagtttggatatattgcaattcatgaacaaatgttccgcagtttcggtttcagagtgacaagaggggcaagaggtgtca |
31699652 |
T |
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| Q |
111 |
agaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttttatctt |
190 |
Q |
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||| |||||||||| || || || || ||| |||||||| || ||||| |||| ||||||||||| ||||| ||||| |
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| T |
31699651 |
agagcaataccttttctttgcagattggatcttgttgggaggatattcttagccagccgccacatgaaatttttaatctt |
31699572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 29782986 - 29783159
Alignment:
| Q |
11 |
caaaggcgatgcaaacagtgctagtttggacaaattacagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtct |
110 |
Q |
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|||||| || |||||||| ||| ||| ||||| ||||||||||| ||||| ||||||||||| || | |||||||||||||| ||||| | | || |
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| T |
29782986 |
caaaggtgaggcaaacagggctcattttgacaagttacagttcataaataagtgttccacagtttccacatcagaatgacataacgggcataaaggatcc |
29783085 |
T |
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| Q |
111 |
agaacaatacctttcctctgtaggttatgtctagttgggagaatgttctttgccaagcgccacatgaagttttt |
184 |
Q |
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| T |
29783086 |
aaggatatacctttcttttgtagatcgtgcctggttgggaggatgttctttgccaaacgccacatgaagttttt |
29783159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 65312 - 65466
Alignment:
| Q |
47 |
acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt |
146 |
Q |
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|||||||||||| | |||||||||||| || | |||| |||||||| |||||| | ||||| ||| ||||||||||||||| || || || |||||| |
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| T |
65312 |
acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt |
65411 |
T |
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| Q |
147 |
gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg |
201 |
Q |
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||||| |||||||||||||||| |||||||||||| || | ||||||||| |||| |
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| T |
65412 |
gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg |
65466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 20386703 - 20386857
Alignment:
| Q |
47 |
acagttcatgaataaatgttccacagtctcagcttcagaatgacataaagggcaggaggtgtctagaacaatacctttcctctgtaggttatgtctagtt |
146 |
Q |
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|||||||||||| | |||||||||||| || | |||| |||||||| |||||| | ||||| ||| ||||||||||||||| || || || |||||| |
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| T |
20386703 |
acagttcatgaaaagatgttccacagtttccacatcagcatgacatatagggcataaagtgtcgagagaaatacctttcctctgcagattttgcctagtt |
20386802 |
T |
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| Q |
147 |
gggagaatgttctttgccaagcgccacatgaagttttttatcttgttggggattg |
201 |
Q |
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||||| |||||||||||||||| |||||||||||| || | ||||||||| |||| |
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| T |
20386803 |
gggaggatgttctttgccaagcaccacatgaagttcttcaccttgttgggaattg |
20386857 |
T |
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