View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_30 (Length: 348)
Name: NF11207_low_30
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 59 - 333
Target Start/End: Complemental strand, 41521984 - 41521710
Alignment:
| Q |
59 |
agcttggctcggctcggcttcagcttctaactcaatctgatcggtgattgcatggttataaacagttgcggctgctttagcagcagcaacttggatgtct |
158 |
Q |
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| T |
41521984 |
agcttggctcggctcggcttcagcttctaactcaatctgatcggtgattgcatggttataaacagttgcggctgctttagcagccgcaacttggatgtct |
41521885 |
T |
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| Q |
159 |
ttaggagaggcactagctgcacgtggcagcacggcagctaattcgggaaaattgaggtaagccgaagagcctttgatagtaagagcagccacatcatgag |
258 |
Q |
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| T |
41521884 |
ttaggagaggcactagctgcacgtggcagcacggcagctaattcgggaaaattgaggtaagccgaagagcctttgatagtaagagcagccacatcatgag |
41521785 |
T |
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| Q |
259 |
ctctagcagccatatcaggagttggaaaagttccaagccaaattctggannnnnnncttggctctctaatctctg |
333 |
Q |
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| T |
41521784 |
ctctagcagccatatcaggagttggaaaagttccgagccaaattcttgatttttttcttggctctctaatctctg |
41521710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 41522045 - 41522009
Alignment:
| Q |
19 |
atgatgatccttcattgtgactcgaagaagaagaaga |
55 |
Q |
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| T |
41522045 |
atgatgatccttcattgtgactcgaagaagaagaaga |
41522009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 3021315 - 3021250
Alignment:
| Q |
236 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
301 |
Q |
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| T |
3021315 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3021250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 3030529 - 3030464
Alignment:
| Q |
236 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
301 |
Q |
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| T |
3030529 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3030464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 3038184 - 3038119
Alignment:
| Q |
236 |
agtaagagcagccacatcatgagctctagcagccatatcaggagttggaaaagttccaagccaaat |
301 |
Q |
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| T |
3038184 |
agtaagtgcagcaacatcatgtgcacgtgcagccatttcaggagttggatatgttccaagccaaat |
3038119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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