View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11207_low_31 (Length: 344)

Name: NF11207_low_31
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11207_low_31
NF11207_low_31
[»] chr4 (27 HSPs)
chr4 (19-255)||(1548261-1548498)
chr4 (19-189)||(1552668-1552841)
chr4 (43-326)||(570400-570678)
chr4 (22-255)||(546941-547177)
chr4 (22-219)||(1600447-1600647)
chr4 (23-89)||(8187095-8187161)
chr4 (22-251)||(55908567-55908799)
chr4 (22-94)||(1524485-1524557)
chr4 (27-106)||(532222-532301)
chr4 (22-89)||(12121461-12121528)
chr4 (23-148)||(553508-553633)
chr4 (23-84)||(659738-659799)
chr4 (32-89)||(1519146-1519203)
chr4 (31-234)||(3438422-3438628)
chr4 (49-148)||(644885-644984)
chr4 (22-89)||(1513411-1513478)
chr4 (31-89)||(8184034-8184092)
chr4 (20-66)||(12116602-12116648)
chr4 (49-170)||(53761692-53761816)
chr4 (49-171)||(21834297-21834422)
chr4 (22-99)||(640943-641020)
chr4 (42-103)||(1537757-1537818)
chr4 (23-75)||(1508021-1508073)
chr4 (119-222)||(8186959-8187065)
chr4 (42-89)||(1489365-1489412)
chr4 (23-89)||(1545802-1545868)
chr4 (32-89)||(7225887-7225944)
[»] chr8 (7 HSPs)
chr8 (22-255)||(18315108-18315344)
chr8 (22-244)||(32151329-32151551)
chr8 (49-148)||(28246240-28246339)
chr8 (23-89)||(27922537-27922603)
chr8 (197-252)||(17627897-17627952)
chr8 (43-94)||(21235607-21235658)
chr8 (47-225)||(17636262-17636447)
[»] chr6 (24 HSPs)
chr6 (23-171)||(6432190-6432341)
chr6 (22-224)||(7119185-7119387)
chr6 (22-224)||(7131663-7131865)
chr6 (26-171)||(6394896-6395044)
chr6 (26-171)||(6426543-6426691)
chr6 (22-171)||(6402888-6403040)
chr6 (23-151)||(6589265-6589393)
chr6 (26-109)||(6410038-6410121)
chr6 (42-171)||(6416014-6416146)
chr6 (43-109)||(12102315-12102381)
chr6 (22-105)||(6596916-6596999)
chr6 (49-148)||(11936220-11936319)
chr6 (49-148)||(11948200-11948299)
chr6 (41-107)||(6423264-6423330)
chr6 (43-171)||(6594525-6594656)
chr6 (29-166)||(19632474-19632611)
chr6 (23-171)||(7994101-7994252)
chr6 (195-255)||(9411556-9411616)
chr6 (21-77)||(28935076-28935132)
chr6 (43-106)||(9410751-9410814)
chr6 (43-94)||(9411404-9411455)
chr6 (22-171)||(6585156-6585308)
chr6 (22-79)||(10579750-10579807)
chr6 (22-87)||(14802364-14802429)
[»] chr3 (8 HSPs)
chr3 (42-244)||(13470581-13470783)
chr3 (22-255)||(51113619-51113852)
chr3 (27-150)||(51120836-51120959)
chr3 (22-252)||(51764281-51764511)
chr3 (49-89)||(1657306-1657346)
chr3 (34-74)||(27005791-27005831)
chr3 (30-87)||(33714861-33714918)
chr3 (34-74)||(36811046-36811086)
[»] chr5 (5 HSPs)
chr5 (23-253)||(41889391-41889624)
chr5 (25-150)||(20478025-20478150)
chr5 (23-86)||(41901542-41901605)
chr5 (23-218)||(32267504-32267699)
chr5 (121-230)||(41901398-41901510)
[»] chr7 (2 HSPs)
chr7 (44-223)||(10614643-10614822)
chr7 (49-170)||(15092071-15092195)
[»] chr2 (3 HSPs)
chr2 (23-255)||(32785610-32785842)
chr2 (22-251)||(1037503-1037735)
chr2 (22-87)||(45245091-45245156)
[»] chr1 (5 HSPs)
chr1 (23-106)||(19468486-19468569)
chr1 (25-89)||(52082612-52082676)
chr1 (195-252)||(19468340-19468397)
chr1 (199-255)||(9581276-9581332)
chr1 (199-255)||(9586844-9586900)
[»] scaffold0295 (1 HSPs)
scaffold0295 (22-181)||(533-695)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1548498 - 1548261
Alignment:
Q  19 attgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaa-gtagcttcacttttaaactacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1548498 attgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacg 1548399  T
Q  118 agctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548398 agctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 1548299  T
Q  218 gggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1548298 gggaaaatcgaagaaaatattttgatggtttcatctct 1548261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 1552841 - 1552668
Alignment:
Q  19 attgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt---ttaaacta 115  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||   | ||||||    
T  1552841 attgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttcagtccaagtagcttcccttctataaaacta 1552742  T
Q  116 cgagctaagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgca 189  Q
     | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1552741 tgggctaagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccagtgca 1552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 43 - 326
Target Start/End: Original strand, 570400 - 570678
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 142  Q
    ||||| |||||||||||||||||| |||||| ||| ||||||||||| |||| | || ||||||||| | |   ||||||||||||| || ||||  |||    
T  570400 tgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagttta 570499  T
Q  143 caacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttga 242  Q
    |||||||||||||||| ||||||||  |||   |||||   | |||||| | | |||||||| |  ||||||||||||||||| |||| ||| |||   |    
T  570500 caacatcttaaaacttgacaaatactatcg---gatatctgattgcaataacttaaatcaagtatctgcaaattggggaaaatagaagcaaacattaaaa 570596  T
Q  243 tggtttcatctctctcgaccatgtattgcgagtcaagaatagagacttcaattgatggtttacaacaaattccattgaagaatt 326  Q
    || ||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  570597 tgttttcatcactta--accatgtattgcgagtcaagaatagagacttcaattgatggtttacaacaaattccattgaagaatt 570678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 546941 - 547177
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    ||||||||||||||  | | ||||| |||||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| ||||||  ||||| |   | |    
T  546941 gagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattggat 547040  T
Q  122 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    |||||||| || || ||||||||||||||   |||||| ||||||||||  || || ||||||  ||  |||| | | ||||||||||||||||||||||    
T  547041 aagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataacttaaatcaagcagttgcaaattgg 547140  T
Q  219 ggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    |||| || |||| ||| ||||||||| ||||||||||    
T  547141 ggaacatggaaggaaacattttgatgctttcatctct 547177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 1600447 - 1600647
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    ||||| |||||| ||||  ||||||| ||||||||||||||||||||||||  ||| ||||||||||| |||  | ||||||| | || |||   | |||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  122 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    |||||||| |||||||| ||| || ||   |||||||||| |||||||||||| || ||||||  | ||||| |  ||||||||||||||||||||||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattgg 1600646  T
Q  219 g 219  Q
    |    
T  1600647 g 1600647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 8187161 - 8187095
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8187161 agtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 55908799 - 55908567
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || |||     |||    
T  55908799 gagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggct 55908700  T
Q  122 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    || ||||| ||||||| ||||||||||   |||| |||||||||||||||||| || ||||||  |  |||     |||||||||| | |||||||||||    
T  55908699 aaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattgg 55908600  T
Q  219 ggaaaatcgaagaaaatattttgatggtttcat 251  Q
    ||||||| |||| ||| | | ||||| ||||||    
T  55908599 ggaaaatggaagcaaacaatatgatgttttcat 55908567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 1524557 - 1524485
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 94  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||  ||||||| ||||||||||| ||||    
T  1524557 gagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattcca 1524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 532222 - 532301
Alignment:
Q  27 tttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 106  Q
    |||||||||||||  |||||| |||||||||||||||||| || ||||| | ||||||||||| ||||||||| ||||||    
T  532222 tttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcact 532301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 12121528 - 12121461
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    ||||||||||||||||| | |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  12121528 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 553508 - 553633
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    |||| |||||||||||  ||||||  ||||||||||||||||||||||||| ||| || |||||||| |  | ||| ||||||| || |||  || | ||    
T  553508 agtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggtta 553607  T
Q  123 agttcaactgtctaatcttacaacat 148  Q
    ||||||| |||||||| |||||||||    
T  553608 agttcaaatgtctaatgttacaacat 553633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 659738 - 659799
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaa 84  Q
    |||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||||||    
T  659738 agtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 1519203 - 1519146
Alignment:
Q  32 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 3438628 - 3438422
Alignment:
Q  31 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaac 130  Q
    ||||||||  ||||||||||||||| |||| ||||||| ||| | ||  |||||||||| | ||   |  ||||||  ||||| || ||||||||||||     
T  3438628 atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaa 3438529  T
Q  131 tgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcg 227  Q
    ||||||||||||||||||   |||||||||| |  || ||||||||| ||||||     ||| |   ||| ||||||||| ||||||||||||||||| |    
T  3438528 tgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatag 3438429  T
Q  228 aagaaaa 234  Q
    |||||||    
T  3438428 aagaaaa 3438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 644885 - 644984
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |  ||||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  644885 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 644984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 1513478 - 1513411
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    ||||||||||||||||| | |||||  ||||||||||||||| || |||||||||| |||||||||||    
T  1513478 gagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 8184092 - 8184034
Alignment:
Q  31 atcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 12116648 - 12116602
Alignment:
Q  20 ttgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctc 66  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  12116648 ttgagtgattcatcatcaacacttgtatgtgacaagttcaacacctc 12116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 53761816 - 53761692
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    ||||||||||||| |||| || ||||||| | ||||||||| ||||| |||||||||| || |||     ||||||||||| || ||||| |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  149 ---cttaaaacttcacaaatacctt 170  Q
       |||||||||| |||||||||||    
T  53761716 ctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 21834422 - 21834297
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    |||||||| |||||||||||| ||||||| | ||||||| |  | | |||||||||||||  ||| ||  | ||||||||| ||  ||||||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  149 ---cttaaaacttcacaaataccttc 171  Q
       ||||||||||| |||||||||||    
T  21834322 ttccttaaaacttcgcaaataccttc 21834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 640943 - 641020
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtag 99  Q
    |||||||||||||||||   |||||| |||||||||||||||||||| | | || | |||||| |||| |||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtag 641020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 1537818 - 1537757
Alignment:
Q  42 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttc 103  Q
    |||||| ||||||||||||||| || |||||||||| ||||||||||| |||| | ||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgcagcttc 1537757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1508073 - 1508021
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttggg 75  Q
    |||||||||||||||| | | |||||||||||||||||||| || ||||||||    
T  1508073 agtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 8187065 - 8186959
Alignment:
Q  119 gctaagttcaactgtctaatcttacaacatctt---aaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaat 215  Q
    ||||||||||| |  ||||||| |||||||||    ||||||| |||||||||||| || |||||| ||  ||||| | ||||||||||||  |||||||    
T  8187065 gctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaat 8186966  T
Q  216 tggggaa 222  Q
    |||||||    
T  8186965 tggggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 1489412 - 1489365
Alignment:
Q  42 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||||| ||||||||||||||| || |||||||||| |||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 1545802 - 1545868
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    ||||||||||||||||  ||||||    |||||||||||||||||||||| |||| || ||||||||    
T  1545802 agtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 7225944 - 7225887
Alignment:
Q  32 tcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||||||  |||||||||||||||||||| ||||||| || | ||| |||||||||||    
T  7225944 tcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttca 7225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 18315344 - 18315108
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| | || ||  |||||||    
T  18315344 gagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagct 18315245  T
Q  122 aagttcaactgtctaatct---tacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    |||||||||||||||||||    ||||| || |||||||| |||||||||||| || | ||||  |  ||| |   ||||||||||||  ||||||||||    
T  18315244 aagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgcaaattgg 18315145  T
Q  219 ggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||| |||||||||||||||||| |||| |||||    
T  18315144 ggaaaatggaagaaaatattttgatgctttcctctct 18315108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 32151329 - 32151551
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||  ||||||  ||||||||| ||||||||||| |||| || ||| ||||||| |||| | |||||||| | |||||  |  |      
T  32151329 gagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtg 32151428  T
Q  122 aagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgggga 221  Q
    || ||||| || ||||||| | | ||||||||||||| |||||| ||||| || ||||||  |  ||||    |||||||||||||||||||||| ||||    
T  32151429 aaattcaaatgcctaatctcagagcatcttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattaggga 32151528  T
Q  222 aaatcgaagaaaatattttgatg 244  Q
    |||| |||| ||| |||||||||    
T  32151529 aaatggaagcaaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 28246339 - 28246240
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || ||| ||||| ||| ||||| |||||||| |||||||||    
T  28246339 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacat 28246240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 27922537 - 27922603
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||| ||||||||||| | |||||| |||||||||||||||||||| |||||||| |||||||||||    
T  27922537 agtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 17627952 - 17627897
Alignment:
Q  197 aaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 252  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatc 17627897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 21235607 - 21235658
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 94  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactcca 21235658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 17636447 - 17636262
Alignment:
Q  47 tgtgacaagttcaacacctccagtttgggaatttcaaagttca----gtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 142  Q
    |||||||||||||||||||||| |||||||| |||||||||||     || | |||| |||||| || |||  ||  |||||||||| || ||||| |||    
T  17636447 tgtgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatatta 17636348  T
Q  143 caacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaat 225  Q
     |||||   |||||||||| |||||||||||  ||||||||   | ||||||     ||||||||||| |||||||||||||||||    
T  17636347 gaacatccccttaaaacttgacaaatacctttctctgatattttattgcaatctcgtaaatcaagcagctgcaaattggggaaaat 17636262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 6432190 - 6432341
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    ||||||||||||||||  ||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||| || |   ||||    
T  6432190 agtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggcta 6432289  T
Q  123 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
    ||||||| ||| |||  |||||||||   |||||||||| ||||||||||||    
T  6432290 agttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 7119185 - 7119387
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | |||    
T  7119185 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7119284  T
Q  122 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    |||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||    
T  7119285 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7119381  T
Q  219 ggaaaa 224  Q
    ||||||    
T  7119382 ggaaaa 7119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 7131663 - 7131865
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||   | |||| ||||||||||||||||||||| | | |||   ||||||||| |||||||||||||||| || |||   | |||    
T  7131663 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7131762  T
Q  122 aagttcaactgtctaatcttacaacatct---taaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    |||||||| ||| |||||||| |||||||   |||||||| ||||||||||||    ||||||  | ||||| || |||||||||| ||||| |||||||    
T  7131763 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttca---gatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7131859  T
Q  219 ggaaaa 224  Q
    ||||||    
T  7131860 ggaaaa 7131865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 6394896 - 6395044
Alignment:
Q  26 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagt 125  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| |||| |||| ||||||||| |||    ||||||||    
T  6394896 gtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagt 6394995  T
Q  126 tcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
    |||| ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  6394996 tcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 6426543 - 6426691
Alignment:
Q  26 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagt 125  Q
    |||||||||||||| ||||| | |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| ||||| ||| |||    ||||||||    
T  6426543 gtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagt 6426642  T
Q  126 tcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
    |||| ||| ||| ||||||||||   |||||||||||||||||||||||    
T  6426643 tcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 6402888 - 6403040
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||   | |||| ||||||||||||||| || |||| ||||| | ||||||| | |||||||||||||||| || |||  | || |    
T  6402888 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagtt 6402987  T
Q  122 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
    |||||||| || ||||| |||||||||   |||||||||| ||||||||||||    
T  6402988 aagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 6589393 - 6589265
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    ||||||| ||||| || | |||||| |||||||||||||||||||||  |||||| | ||||||||| ||||||||||||||||||   ||     ||||    
T  6589393 agtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggcta 6589294  T
Q  123 agttcaactgtctaatcttacaacatctt 151  Q
    ||||||| || ||||||||||||||||||    
T  6589293 agttcaaatgcctaatcttacaacatctt 6589265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 6410038 - 6410121
Alignment:
Q  26 gtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 109  Q
    |||||||||||||  ||||||| |||| |||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  6410038 gtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcactttt 6410121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 6416014 - 6416146
Alignment:
Q  42 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 141  Q
    |||||| ||||||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||  || |   ||||||||||| || | ||||||    
T  6416014 ttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctt 6416113  T
Q  142 acaacat---cttaaaacttcacaaataccttc 171  Q
    |||||||    ||||||||| ||||||||||||    
T  6416114 acaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 12102315 - 12102381
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactttt 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcactttt 12102381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 6596999 - 6596916
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcac 105  Q
    ||||||||||||||||| | |||||  ||||||||||||||||||||| | ||||||||||||||| | | ||||| |||||||    
T  6596999 gagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcac 6596916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 11936319 - 11936220
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11936319 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 11948299 - 11948200
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    |||||||| |||||||||||||||||||| ||||||||||| |  | ||||||||| | || |||  |||| ||| ||||| |||||||| |||||||||    
T  11948299 tgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacat 11948200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 6423264 - 6423330
Alignment:
Q  41 cttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcactt 107  Q
    ||||||| ||||||||||||||||||||| ||||||| || |||||||| | || ||||||||||||    
T  6423264 cttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcactt 6423330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 6594656 - 6594525
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctta 142  Q
    ||||| |||||||| |||||||||||||||||||| |  |||||| | |||| ||||||||||| || |||  |  | ||||| ||| ||| ||||||||    
T  6594656 tgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatctta 6594557  T
Q  143 caacat---cttaaaacttcacaaataccttc 171  Q
     |||||   |||||||||| ||||||||||||    
T  6594556 taacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 19632474 - 19632611
Alignment:
Q  29 tcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttca 128  Q
    ||||||||||   ||||||  ||||||| ||||||||| || ||||||| |  |||||| | ||||||||| || ||| || |||  |||| ||||||||    
T  19632474 tcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttca 19632573  T
Q  129 actgtctaatcttacaacatcttaaaacttcacaaata 166  Q
    | ||  | |||||||||||||||||||||| |||||||    
T  19632574 aatgcgttatcttacaacatcttaaaacttgacaaata 19632611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 7994252 - 7994101
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    |||||||| |||| ||  ||||||| ||||| |||||||||||| || || |||| | ||||||||| ||| |||||||||||| ||  || |   ||||    
T  7994252 agtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggcta 7994153  T
Q  123 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
     |||||| || || ||||||||||||   |||||||| | ||||||||||||    
T  7994152 tgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 9411556 - 9411616
Alignment:
Q  195 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||||||||| ||||||||||||||||| |||| |||  |||||||| ||| ||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctct 9411616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 28935076 - 28935132
Alignment:
Q  21 tgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 77  Q
    |||||| |||||| ||||  |||||||||||||||||||||||||| |||| |||||    
T  28935076 tgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaa 28935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 9410751 - 9410814
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 106  Q
    |||||||||||| |||||||||||||  ||||||  ||||||||||| ||||| || |||||||    
T  9410751 tgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatccaattaacttcact 9410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 9411404 - 9411455
Alignment:
Q  43 tgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 94  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||| ||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaatcca 9411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 6585308 - 6585156
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||   |||||| |||||||||||| |||||||  | || || |  |||||| | |||||||||||||||| || |||  | ||      
T  6585308 gagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagta 6585209  T
Q  122 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttc 171  Q
    |||||||| || ||||| ||| |||||   |||||||| | ||||||||||||    
T  6585208 aagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 10579807 - 10579750
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatt 79  Q
    |||||||| ||||||||   |||||| ||||||||||||||||||||| | |||||||    
T  10579807 gagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaatt 10579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 14802364 - 14802429
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 87  Q
    |||||||||||||||||   |||||| |||||| |||||||| ||||  ||||||| |||||||||    
T  14802364 gagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 13470783 - 13470581
Alignment:
Q  42 ttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatctt 141  Q
    |||||| ||||||||||||||||||||| |||||||   ||||||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  142 acaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaaatcgaagaaaatatt 238  Q
    |||||||   |||||||||| ||||||||||   | ||||| |  | |||||  | ||||||||||||| ||||||||||||||| | |||| ||| |||    
T  13470683 acaacatatccttaaaacttgacaaatacct---tttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacatt 13470587  T
Q  239 ttgatg 244  Q
     |||||    
T  13470586 atgatg 13470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 51113852 - 51113619
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    |||||||||||||||||   |||||| ||||||||  ||||||||||||||||||  ||||||||||| |||||||||||||| |||| |||    ||||    
T  51113852 gagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagct 51113753  T
Q  122 aagttcaactgtctaatcttacaacatc---ttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    || ||||| || ||||| ||||||||||   ||||||||| |||||||||||||   |||||  ||  ||||| | | |||||||| || |||| |||||    
T  51113752 aatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcg---gatatctcatagcaatgagttaaatcaagaagctgcagattgg 51113656  T
Q  219 ggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||| |||| ||  ||| ||||| | ||||||||    
T  51113655 ggaaaatggaagcaatcattatgatgctctcatctct 51113619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 51120959 - 51120836
Alignment:
Q  27 tttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagtt 126  Q
    ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| ||||||||||| |||| | || |||||| || ||| ||  |  |||||    
T  51120959 tttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagtt 51120860  T
Q  127 caactgtctaatcttacaacatct 150  Q
    ||| |||||||| |||||||||||    
T  51120859 caagtgtctaatgttacaacatct 51120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 252
Target Start/End: Complemental strand, 51764511 - 51764281
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaac-tacgagc 120  Q
    |||||||| ||||||||   |||||  ||||||||  ||||||||||| || |||| | ||||||||| |||||||||||||||| || ||| | || |     
T  51764511 gagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcg-ga 51764413  T
Q  121 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 217  Q
    || |||||| || ||||||||| |||||   |||||||||||||| | ||||   |  ||||||| | |||||  | | ||||||||||| |||||||||    
T  51764412 taggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacct---ttagatatgcgattgcaagaattaaaatcaagcagctgcaaattg 51764316  T
Q  218 gggaaaatcgaagaaaatattttgatggtttcatc 252  Q
    |||||||| |||| ||| ||| ||||| |||||||    
T  51764315 gggaaaatggaagcaaacattatgatgctttcatc 51764281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 1657306 - 1657346
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  1657306 tgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 27005831 - 27005791
Alignment:
Q  34 atcaatacttgtatgtgacaagttcaacacctccagtttgg 74  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  27005831 atcaattcttgtatgtgacaagttcaagacctccagtttgg 27005791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 33714918 - 33714861
Alignment:
Q  30 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 87  Q
    |||||||||| ||||  | ||||||||||| |||||||||||||| || |||||||||    
T  33714918 catcatcaattcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 36811086 - 36811046
Alignment:
Q  34 atcaatacttgtatgtgacaagttcaacacctccagtttgg 74  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  36811086 atcaattcttgaatgggacaagttcaacacctccagtttgg 36811046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 41889624 - 41889391
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    ||||||||||||||||   |||||| ||| |||||||||||||||| |||||||| || |||||||| | |||||||||||||| || |||  |  | ||    
T  41889624 agtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggata 41889525  T
Q  123 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggg 219  Q
    ||||||| | |||||| |||||||||   |||||||||| |  ||||||||| ||  |||||| ||  |||||  |||||||||| || |||||||| ||    
T  41889524 agttcaaatatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagg 41889425  T
Q  220 gaaaatcgaagaaaatattttgatggtttcatct 253  Q
    |||||| |||| ||| ||| |||||  |||||||    
T  41889424 gaaaatggaagcaaacattatgatgtcttcatct 41889391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 20478150 - 20478025
Alignment:
Q  25 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaag 124  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||| || ||  ||  | |||||||    
T  20478150 tgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaag 20478051  T
Q  125 ttcaactgtctaatcttacaacatct 150  Q
    ||||| || || | ||||||||||||    
T  20478050 ttcaaatgccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 41901605 - 41901542
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 86  Q
    |||| |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||    
T  41901605 agtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 32267504 - 32267699
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    |||| |||||||||||   |||| |||||||||||||| ||||||| |||||||| ||||||||||| | |   ||| |||||| || |||   | | ||    
T  32267504 agtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactgggata 32267600  T
Q  123 agttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattgg 218  Q
    ||||||| |||||||| |||||||||   ||||||| || |   |||||||| || ||||||| ||  |||||  ||||||||||||| ||||||||||    
T  32267601 agttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 32267699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 41901510 - 41901398
Alignment:
Q  121 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 217  Q
    ||||||||| |||||||| ||||||||    |||||||||| |  ||||||||| ||  |||||| ||  |||||  ||||||||||||| |||||||||    
T  41901510 taagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaattg 41901411  T
Q  218 gggaaaatcgaag 230  Q
    |||||||| ||||    
T  41901410 gggaaaatggaag 41901398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 10614643 - 10614822
Alignment:
Q  44 gtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttac 143  Q
    |||| ||||||||||||||||||||| |||||||   ||| ||||| |||||||||||||||||||  || |   ||||||||||| || ||||||||||    
T  10614643 gtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttac 10614742  T
Q  144 aacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaaa 223  Q
    |||||   |||||||||| |||||||||||| |   ||| |  | |||||  | |||||||||||||||||||||||||||||    
T  10614743 aacatatccttaaaacttgacaaataccttcat---ataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 15092195 - 15092071
Alignment:
Q  49 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat 148  Q
    |||||| |||||||||||||| | ||||| | ||||||||| |||| |||| |||||  ||||||  | || ||||||||| ||| ||| |||| |||||    
T  15092195 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacat 15092096  T
Q  149 ---cttaaaacttcacaaatacctt 170  Q
       |||||||||| | |||||||||    
T  15092095 ttccttaaaacttgagaaatacctt 15092071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 32785842 - 32785610
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagcta 122  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||  || |||||||| || | |  |||  | | || ||    |  | |    
T  32785842 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaaaagtggtcca 32785743  T
Q  123 agttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattggggaa 222  Q
    | ||||| |||||||||||| |||||||||||| || |||||||||||| || ||||||  |  |||||   |||||||||| |||||||||||||  ||    
T  32785742 aattcaaatgtctaatcttagaacatcttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaa 32785643  T
Q  223 aatcgaagaaaatattttgatggtttcatctct 255  Q
    ||| |||||||| ||  ||||| ||||||||||    
T  32785642 aatagaagaaaacatcctgatgctttcatctct 32785610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 1037735 - 1037503
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacga-gc 120  Q
    ||||||||||||||||| || ||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || || ||  | ||    
T  1037735 gagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaa-tagtaggc 1037637  T
Q  121 taagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgccactgcaattaatcaaatcaagcagttgcaaattg 217  Q
    ||| ||||| ||||||| ||||||||||   ||||||||||||||||||||||| || ||||||  |  |||     |||||||||| | ||||||||||    
T  1037636 taaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattg 1037537  T
Q  218 gggaaaatcgaagaaaatattttgatggtttcat 251  Q
    |||||||| |||| ||| | | ||||| ||||||    
T  1037536 gggaaaatggaagcaaacaatatgatgttttcat 1037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 45245156 - 45245091
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagtt 87  Q
    |||||||||||||||||   |||| | |||||| ||||||||||| ||||| |||| |||||||||    
T  45245156 gagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 19468569 - 19468486
Alignment:
Q  23 agtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcact 106  Q
    ||||||||||||||||   |||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| ||||||    
T  19468569 agtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcact 19468486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 52082612 - 52082676
Alignment:
Q  25 tgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 89  Q
    |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || ||||||||    
T  52082612 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 52082676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  195 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatc 252  Q
    ||||||||||||| ||||||||||| ||||| |||| ||| ||| ||||| |||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 9581276 - 9581332
Alignment:
Q  199 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9581332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 9586844 - 9586900
Alignment:
Q  199 atcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatctct 255  Q
    ||||||||| ||||||||||||||||| |||| ||| ||| ||||| ||| ||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9586900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 695 - 533
Alignment:
Q  22 gagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaagtagcttcacttttaaactacgagct 121  Q
    ||||||||||||||| | |||||||||||||||||| |||||||| | ||  |||| || |||||| | || |||||| |||||| || |||     |||    
T  695 gagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggct 596  T
Q  122 aagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatg 181  Q
    || ||||| ||||||  ||||||||||   |||| |||||||||||||||||| || ||||||    
T  595 aaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatg 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University