View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_32 (Length: 342)
Name: NF11207_low_32
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_32 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 165027 - 164823
Alignment:
| Q |
40 |
taacaacatattttagtaaatgaataataagaagcattgattctaataaacccatgatgattactgaactcacatctctct--atagaagaaaactggta |
137 |
Q |
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| T |
165027 |
taacaacatattttagtaa-tgaatactaagatgcattggttctaataaacccatgacgattactgaactcacatctctctctatagaagaaaactggta |
164929 |
T |
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| Q |
138 |
agcaattttcagacaataatgaactaagtaagtatcatacactccaatctttacatttcatgaaaatcctttcacacattttgtcatacaagagcataac |
237 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
164928 |
agcaattttcagacaataatgaactaagcaagtatcatactctccaatctttacatttcatgaagatcctttcacacattttgtcatacaagagcataac |
164829 |
T |
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| Q |
238 |
agaaat |
243 |
Q |
| |
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|||||| |
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| T |
164828 |
agaaat |
164823 |
T |
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Target: scaffold0060 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 76314 - 76145
Alignment:
| Q |
58 |
aatgaataataagaagcattgattctaataaacccatgatgattactgaactcacatctctct--atagaagaaaactggtaagcaattttcagacaata |
155 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |
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| T |
76314 |
aatgaataataagaagcattggttctaataaacccatgatgattactgaactcacatctctctctatagaagaaacctggtaagcaattttcagaccata |
76215 |
T |
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| Q |
156 |
atgaactaagtaagtatcatacactccaatctttacatttcatgaaaatcctttcacacattttgtcataca |
227 |
Q |
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| T |
76214 |
atgaactaagcaagtataatactctccaatctttacatttcatgaaaatccttt--catattttgtcataca |
76145 |
T |
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Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 8434219 - 8434327
Alignment:
| Q |
58 |
aatgaataataagaagcattgattctaataaacccatgatgattactgaactcacatctctctatagaagaaaactggtaagcaattttcagacaataat |
157 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
8434219 |
aatgaataataagaagcattggttctaataaacccatgatgattactgaactcgcatctctctatagaagaaacctggtaagcaattttgagaccataat |
8434318 |
T |
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| Q |
158 |
gaactaagt |
166 |
Q |
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| T |
8434319 |
gaactaagt |
8434327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 8431250 - 8431304
Alignment:
| Q |
167 |
aagtatcatacactccaatctttacatttcatgaaaatcctttcacacattttgt |
221 |
Q |
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||||||||||| ||||||||||||||| ||||| | ||| |||||||||||||| |
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| T |
8431250 |
aagtatcatactctccaatctttacataccatgacactccattcacacattttgt |
8431304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 29042049 - 29042102
Alignment:
| Q |
274 |
ctaggactgtcgaatcgcttggtcgaccatgtacaatggtgacatttccacact |
327 |
Q |
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| T |
29042049 |
ctaggactgtcgaatggcttggtcgaccatgtgcaatggtgacatttccacact |
29042102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 55778982 - 55778947
Alignment:
| Q |
42 |
acaacatattttagtaaatgaataataagaagcattg |
78 |
Q |
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| T |
55778982 |
acaacatattttagtaa-tgaataataagaagcattg |
55778947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 28047423 - 28047388
Alignment:
| Q |
42 |
acaacatattttagtaaatgaataataagaagcattg |
78 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
28047423 |
acaacatattttagtaa-tgaataataagaagcattg |
28047388 |
T |
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