View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_35 (Length: 310)
Name: NF11207_low_35
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 5396419 - 5396697
Alignment:
| Q |
17 |
agttgataccgataagagagtgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgtttg |
116 |
Q |
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| T |
5396419 |
agttgataccgataagagaatgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgcttg |
5396518 |
T |
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| Q |
117 |
tcgtatgttataaacaaggttgaatacttacattttgaaccctaatcgtcaactgaaaacgaattcaagctataaaaatataagtgtatcttccatgctt |
216 |
Q |
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| T |
5396519 |
tcgtatgttgtaaacaaggttgaatacttacattttgaaccctaatcatcaactgaaaacgaattcaagctataagaatataagtgtatcttccatgctt |
5396618 |
T |
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| Q |
217 |
atttttctttaaatttcaacaatgtagtcacatttcaattctaagttattttctggtatgaacgtttttgctgctgtgt |
295 |
Q |
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| T |
5396619 |
atttttctttaaatttcaacaatgtagtcacatttcaattctaagttattttctggtgtgaacgtttttgctgctgtgt |
5396697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 5392925 - 5393014
Alignment:
| Q |
28 |
ataagagagtgtagacgacgcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgtttgtc |
118 |
Q |
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| T |
5392925 |
ataagagagtgtagacgacgcatatt-aaccgtcaatggaagcaaacaagatttattgtttgacaaaaatagtactgaaagattgcttgtc |
5393014 |
T |
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