View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_38 (Length: 298)
Name: NF11207_low_38
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_38 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 179098 - 179402
Alignment:
| Q |
2 |
cacagtgaaggggaacacacggaaaaccaaacagatgtcacaccaggaaggaacaaaaatgtagcagcaaccgctacaatctatgcaaaacaggggccag |
101 |
Q |
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||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
179098 |
cacagtgaaggggaacacacgaaaaaccaaaccgatgccacaccaggaaggaacaaaaatgtagcagcaaccgctgcaatctatgcaaaacaggggccag |
179197 |
T |
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| Q |
102 |
acnnnnnnnnnn-------gatagcagatggacagcaggcacgtccaacaaccacaacataagaacactccattgacaatcttcccccaa-cttaaggta |
193 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
179198 |
acaacagcaaaaaaaaaaagatagcagatggacagcaggcacgtccaacaaccacaacataagaacactctattggcaatcttcccccaaacttaaggta |
179297 |
T |
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| Q |
194 |
caccataagaaagaagttgataactgcaaacatattgactcttaataaatgttcaaattgaagagnnnnnnntatcagcaaagacacatatctaccattt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
179298 |
caccataagaaagaagttgataactgcaaacatattgactctcaataaatgttcaaattgaagagaaaaaaatataagcaaagacacatatctaccattt |
179397 |
T |
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| Q |
294 |
taata |
298 |
Q |
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||||| |
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| T |
179398 |
taata |
179402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 150258 - 150564
Alignment:
| Q |
2 |
cacagtgaaggggaacacacggaaaaccaaacagatgtcacaccaggaaggaacaaaaatgtagcagcaaccgctacaatctatgcaaaacaggggccag |
101 |
Q |
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||||| ||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
150258 |
cacagggaaggggaatacacgaaaaaccaaaccgatgccacaccaggaaggaacaaaaatgtagcagcaaccactgcaatctatgcaaaacaggggccag |
150357 |
T |
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| Q |
102 |
acnnnnnnnnnn---------gatagcagatggacagcaggcacgtccaacaaccacaacataagaacactccattgacaatcttcccccaa-cttaagg |
191 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
150358 |
acaacagcaaaaaaaaaaaaagatagcagatggacagcagacacgtccaacaaccacaacataagaacactccattggcaatcttcccccaaacttaagg |
150457 |
T |
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| Q |
192 |
tacaccataagaaagaagttgataactgcaaacatattgactcttaataaatgttcaaattgaagagnnnnnnntatcagcaaagacacatatctaccat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
150458 |
tacaccataagaaagaagttgataactgcaaacatattgactctcaataaatgttcaaattgaagagattttttttttagcaaagacacatatctaccat |
150557 |
T |
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| Q |
292 |
tttaata |
298 |
Q |
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||||||| |
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| T |
150558 |
tttaata |
150564 |
T |
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