View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_41 (Length: 283)
Name: NF11207_low_41
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 34646518 - 34646768
Alignment:
| Q |
18 |
ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctata |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646518 |
ataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctata |
34646617 |
T |
|
| Q |
118 |
gtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34646618 |
gtttgaaatcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattactga |
34646717 |
T |
|
| Q |
218 |
tggtattgtttgctttgctttccaaccatctcctcaacttggttccatctt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34646718 |
tggtattgtttgctttgctttccaaccatctcctcaacttggttccatctt |
34646768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 34666212 - 34666462
Alignment:
| Q |
18 |
ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctata |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666212 |
ataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctata |
34666311 |
T |
|
| Q |
118 |
gtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
34666312 |
gtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttccaattactga |
34666411 |
T |
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| Q |
218 |
tggtattgtttgctttgctttccaaccatctcctcaacttggttccatctt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666412 |
tggtattgtttgctttgctttccaaccatctcctcaacttggttccatctt |
34666462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 19648987 - 19648813
Alignment:
| Q |
64 |
tggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| | ||| || |||||| | | |||| | |||||||||||||||||||||| |||||||| |
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| T |
19648987 |
tggtgaaactagatcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattt |
19648888 |
T |
|
| Q |
164 |
taaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctgatggtattgtttgctttgcttt |
238 |
Q |
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||||||||| ||| || ||||| | | ||||||||||||| || ||||||||||| | |||||||| ||||| |
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| T |
19648887 |
taaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttgcttagcttt |
19648813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 45645738 - 45645899
Alignment:
| Q |
42 |
ttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgatt |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||||| ||||||||| || ||| |||| |||||||||||||| || || | |||||||||||| |
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| T |
45645738 |
ttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgatccttataaactattcggcctatgctatagtgcgacattagatgaatatgatt |
45645837 |
T |
|
| Q |
142 |
ttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtaccttt |
203 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45645838 |
ttcctctaatcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt |
45645899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 1390710 - 1390814
Alignment:
| Q |
125 |
atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctgatggtatt |
224 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||||| ||| || ||||||| |||||||| |||||||||| | |||| ||||| || |
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| T |
1390710 |
atcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctattagcacctttgttcaagttgccgatggggtt |
1390809 |
T |
|
| Q |
225 |
gtttg |
229 |
Q |
| |
|
||||| |
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| T |
1390810 |
gtttg |
1390814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 14192436 - 14192632
Alignment:
| Q |
42 |
ttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgatt |
141 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| |||||||| ||||||| |||| ||| | ||| ||||||||| | ||| | | | |||||||| |
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| T |
14192436 |
ttggaatctgctgtggtagatttggtgaagttagaacgtgttgacgatcctactcaaacattaaacctttgctatagtgtcaaagctgagggatatgatt |
14192535 |
T |
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| Q |
142 |
ttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctgatggtattgtttgctttgcttt |
238 |
Q |
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||||||||||||| |||||||||||||| ||||| || |||||| ||||||| || |||||| | ||||||||||| || ||||||| ||||| |
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|
| T |
14192536 |
ttcctataatcacaatgcattttaaaggtgcagatgtcgatttgcatcctattagcacatttgtttcggttgctgatggtgttttttgcttggcttt |
14192632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 14183477 - 14183650
Alignment:
| Q |
33 |
tatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatg |
132 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||| ||||||||||| | |||||| ||||||| | | | ||| | ||| |||||||| | | |||| ||| |
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|
| T |
14183477 |
tataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatcagatg |
14183576 |
T |
|
| Q |
133 |
aatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgtt |
206 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||| |||||||| |||||||||| |||||| |
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| T |
14183577 |
gatatgattttcctataataacgacacattttaaaggtgcggatgttaagttgcatcctattagtacatttgtt |
14183650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 40718234 - 40718439
Alignment:
| Q |
33 |
tatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatagtttgaaatcaaatg |
132 |
Q |
| |
|
|||| ||| ||||||||||| |||| || | ||||||||||| |||||||||||||| | ||||||||| | ||| ||||||||| | |||| | |
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|
| T |
40718234 |
tataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaactcaacaattaaacctttgctatagtaccacatcagaca |
40718333 |
T |
|
| Q |
133 |
aatatgattttcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtacctttgttccaattgctgatggtattgtttgctt |
232 |
Q |
| |
|
|||| | |||||| |||| || || |||||||||||||| ||| || |||||||| | ||||||||||||||| | |||| |||| ||||||||||| |
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| T |
40718334 |
tatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatgacattgtttgctt |
40718433 |
T |
|
| Q |
233 |
tgcttt |
238 |
Q |
| |
|
|||||| |
|
|
| T |
40718434 |
tgcttt |
40718439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 14201537 - 14201597
Alignment:
| Q |
143 |
tcctataatcaccgcacattttaaaggtgccgatgttgagttgcattctattagtaccttt |
203 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||| || | ||| ||| ||||||||||||| |
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|
| T |
14201537 |
tcctttaatcactgcacattttaaaggtgcagatattaaattgtattatattagtaccttt |
14201597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 34303186 - 34303342
Alignment:
| Q |
19 |
taccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaacaattcagcctatgctatag |
118 |
Q |
| |
|
||||||| || || |||||||| ||| | ||||| | || |||||||||| |||||| || ||||||||||||||||||||||| || ||||| || | |
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| T |
34303186 |
taccatctgatgtttatactaaattgaattcagcaatcgtagatttggtgacactagaacgagttgatgatcctaatcaacaatttagtctatgttacaa |
34303285 |
T |
|
| Q |
119 |
tttgaaatcaaat---gaatatgattttcctataatcaccgcacattttaaaggtgc |
172 |
Q |
| |
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| | |||| || ||||||||||||||| || |||||||||||||||||||| |
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| T |
34303286 |
tgtttcatcagatgaagaatatgattttccttatatgaccgcacattttaaaggtgc |
34303342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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