View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11207_low_42 (Length: 279)
Name: NF11207_low_42
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 1546472 - 1546713
Alignment:
| Q |
18 |
cactccacatgtaatgttgatatcgacaaaggtattcgacgtgattcatgtgattgggttgcacaataaaagtcattaactttgtgccaaccactcacac |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1546472 |
cactccacatgtaatgtcgatatcgacaaaggtatttgacgtgattcatgtgattgggttgcacattaaaagtcattaactttgtgccaaccactcacac |
1546571 |
T |
|
| Q |
118 |
cacaaactttttctaatggttgaagtaaccattagaaaaactattgtccatagttagatgaaaccactttggatcttcagcttgactaaacatctagatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1546572 |
cacaaactttttctaatggttgaagtaaccattagaaaaactattgtccatagttagatgaaaccactttggatcttcagcttgactaaacatctagatt |
1546671 |
T |
|
| Q |
218 |
gagtttatcaagaggtatatcaaacaggaaatattgcaatcc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1546672 |
gagtttatcaagaggtatatcaaacaggaaatattgcaatcc |
1546713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University