View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_43 (Length: 269)
Name: NF11207_low_43
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 2 - 259
Target Start/End: Original strand, 31319959 - 31320236
Alignment:
| Q |
2 |
cttatttcctttaaatccatttttcttttgaagagatggacaatcaacattgatatgaccgtgttttacacactcaaaacaagtc--------------- |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31319959 |
cttatttcctttaaatccatttttcttttgaagagatggacaatcaacattgatatgaccgtgttttacaaactcaaaacaagtgaagttttgatttgat |
31320058 |
T |
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| Q |
87 |
-----tctttccttattcttcacaagtctctttccttgaacaaatttgattgtcttgtctttctttaagaattttcttannnnnnnagtttcaactcatg |
181 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31320059 |
gttaatgtttccttattcttcacaagtctctttccttgaacaaatttgattgtcttgtctttctttaagaattttcttatttttttagtttcaactcatg |
31320158 |
T |
|
| Q |
182 |
ttcttgcagttttccaaatagtgccgccagtgacatttttcctagggattttattttctgaaatggttgtcgcctttg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320159 |
ttcttgcagttttccaaatagtgccgccagtgacatttttcctagggattttattttctgaaatggttgtcgcctttg |
31320236 |
T |
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