View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_44 (Length: 266)
Name: NF11207_low_44
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_44 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 179610 - 179373
Alignment:
| Q |
23 |
gtgaccattgattgaagtttatataaacatttttgtggttggtgtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtct |
122 |
Q |
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| T |
179610 |
gtgaccattgattgaagtttatataaacatttttgtggttggtgtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtct |
179511 |
T |
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| Q |
123 |
ttgttcaatgttttccaaatgaaggatttaaacttgattgcttcataatgtccatagatagatccttcattaagaaaattaagcatactttggcatctgt |
222 |
Q |
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| T |
179510 |
ttgttcaatgttttccaaatgaaggatttaaacttgattgcttcataatgtccatagatagatccttcattaagaaacttaagcatactttggcatctgt |
179411 |
T |
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| Q |
223 |
tttccctatattaaaatggtagatatgtgtctctgctt |
260 |
Q |
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| T |
179410 |
tttccctatattaaaatggtagatatgtgtctttgctt |
179373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 150772 - 150536
Alignment:
| Q |
23 |
gtgaccattgattgaagtttatataaacatttttgtggttggtgtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtct |
122 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150772 |
gtgaccatttattgaagtttatataaacatttttgtggttggtgtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtct |
150673 |
T |
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| Q |
123 |
ttgttcaatgttttccaaatgaaggatttaaacttgattgcttcataatgtccatagatagatccttcattaagaaaattaagcatactttggcatctgt |
222 |
Q |
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| T |
150672 |
ttgttcaatgttttccaaatgaaggatttaaacttgattgcttcataatgtccatagatagatccttcattaagaaacttaagcatactttggcatatgt |
150573 |
T |
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| Q |
223 |
tttccctatattaaaatggtagatatgtgtctctgct |
259 |
Q |
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| T |
150572 |
tttccctatattaaaatggtagatatgtgtctttgct |
150536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 441744 - 441876
Alignment:
| Q |
65 |
tgtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtctttgttcaatgttttccaaatgaaggatttaaacttgattgct |
164 |
Q |
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| T |
441744 |
tgtttctatttcttagtagtggaactaaagaaaagacaataaaattggctatttgtctttgttcaatgtttttcaaatgaaggatttaaactagattgct |
441843 |
T |
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| Q |
165 |
tcataatgtccatagatagatccttcattaaga |
197 |
Q |
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| T |
441844 |
tcataatgtccatagctagatccttaattaaga |
441876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 21268430 - 21268597
Alignment:
| Q |
31 |
tgattgaagtttatataaacatttttgtggttggt-gtttctatttctcagtagtggaactaaagaaaagacaataaaattggctatttgtctttgttca |
129 |
Q |
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||||||| ||||||| ||| ||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
21268430 |
tgattgatgtttataaaaatctttttttggtcggttgtttctatttcttagtagtggaactaaagaaaagacaataaaattagctatttgtctctgttca |
21268529 |
T |
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| Q |
130 |
atgttttccaaatgaaggatttaaacttgattgcttcataatgtccatagatagatccttcattaaga |
197 |
Q |
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| T |
21268530 |
atgtttttcaaatgaaggatttaaactagattgcttcataatgtccataggtagatccttaattaaga |
21268597 |
T |
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