View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_49 (Length: 247)
Name: NF11207_low_49
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 52993214 - 52993376
Alignment:
| Q |
10 |
atgaaagcaatagtagcaaaccagaagcaactgagtaaatacttggccatttctttttgtgattttcatttccatatattcttatatttgcctctagtct |
109 |
Q |
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| T |
52993214 |
atgaaagcaatagtagcaaaccagaagcaactgagtaaatacttggccatttctttttgtgattttcatttccatatattcttatatttgcctctagtct |
52993313 |
T |
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| Q |
110 |
tgcttgattcaatgccttaactgtccccacaacaacacataaccaatcaatttattttgacca |
172 |
Q |
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| T |
52993314 |
tgcttgattcaatgccttaactgtccccacaacaacacataaccaatcaatttatttttacca |
52993376 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 52993405 - 52993452
Alignment:
| Q |
184 |
tgtaaagatatataaaagctaaaaatcattaaaagcaatatacaaact |
231 |
Q |
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| T |
52993405 |
tgtaaagatatataaaagctaaaaatcattaaaagcaatatacaaact |
52993452 |
T |
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