View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_5 (Length: 616)
Name: NF11207_low_5
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 41183122 - 41183507
Alignment:
| Q |
16 |
caaatcagatcaatggtatgcacctcaatcctccttcactcgatttatttcttggttttattattttgaattggaattagtagtacttaaactgaataat |
115 |
Q |
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| T |
41183122 |
caaatcagatcaatggtatgcacctcaatcctccttcactcgatttatttcttggttttattattttgaattggaattagtagtacttaaactgaataat |
41183221 |
T |
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| Q |
116 |
aataataattttgtgaacaataaagatgaagaacttctgaatcggcgacgataaactagggtttctcaaggcagtgaaagctgcatttgaatataataac |
215 |
Q |
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| T |
41183222 |
aataataattttgtgaaccataaagatgaagaacttccgaatcggcgacgataaactagggtttctcaaggcagtgaaagctgcatttgaat---ataac |
41183318 |
T |
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| Q |
216 |
agaataaagtatcatcagtttttaaaactcctgaaagatttgagggcgggaagaagaattgata---------------------tgaagaaactgttta |
294 |
Q |
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| T |
41183319 |
agaataaagtatcatcagtttttaaaactcctgaaagatttgagggcgggaagaagaattgatataagaggtgaaatgactagagtgaagaaactgttta |
41183418 |
T |
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| Q |
295 |
aaggacatacagatttaattctgggatt-nnnnnnntccttccaactggttagttactactttttccattgcacttgacatatgttcac |
382 |
Q |
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| T |
41183419 |
aaggacatacagatttaattctgggattaaaaaaaatccttccaactggttagttactactttttccattgcacttcacatatgttcac |
41183507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 444 - 594
Target Start/End: Original strand, 41183569 - 41183719
Alignment:
| Q |
444 |
aacaagataattttagaggagcaatttctatgtgtagttgcatcacttacattgttgaaatatttatgtctattatttatgtggtttaacgaagcatgta |
543 |
Q |
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| T |
41183569 |
aacaagataattttagaggagcaatttctatgtgtagttacatcacttacattgttgaaatatttatgtctattatttatgtggtttaacgaagcatgta |
41183668 |
T |
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| Q |
544 |
gttgttcatcatgttagtttatatatgtattgttgtgatccttgaaggtat |
594 |
Q |
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| T |
41183669 |
gttgttcatcatgttagtttatatatgtattgttgtgatccttgaaggtat |
41183719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 376
Target Start/End: Complemental strand, 32348667 - 32348624
Alignment:
| Q |
333 |
ttccaactggttagttactactttttccattgcacttgacatat |
376 |
Q |
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| T |
32348667 |
ttccaactggttcgttcctactttttccattgcacttcacatat |
32348624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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