View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_54 (Length: 238)
Name: NF11207_low_54
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16307228 - 16307450
Alignment:
| Q |
1 |
tgccctttttgctcagaccggtcaacaaaagttactgaccattttgcaattccactaggatcgacaatctataacagaaatatcagtcaattagctgaca |
100 |
Q |
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| T |
16307228 |
tgccttttttgctcagaccggtcaacataagttactgaccattttgcaattccattaggatcgacaatctataacagaaatatcagtcaattagctgaca |
16307327 |
T |
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| Q |
101 |
atttaataatattaaacaaacttgcaacacgaacgaaattctcacagtgaagaaggtcggtaggtaatgctcatctagaatgcaattcttcccatccaca |
200 |
Q |
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| T |
16307328 |
atttaaaaatgttaaacaaacttgcaacacgaacgaaattctcacagtgaagaaggtcggtaggtaatgctcatctagaatgcaattcttcccatccaca |
16307427 |
T |
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| Q |
201 |
ctggactgtaacatcaagaatgt |
223 |
Q |
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| T |
16307428 |
caggactgtaacgtcaagaatgt |
16307450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 16297323 - 16297542
Alignment:
| Q |
10 |
tgctcagaccggtcaacaaaagttactgaccattttgcaattccactaggatcgacaatctataacagaaatatcagtcaattagctgacaatttaa--- |
106 |
Q |
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| T |
16297323 |
tgctctgaccagtcaacatgagttaccgaccagtttgcaattccaccaggatcgacaatctataacagaaatattagtcaattagctggcagtttaaaac |
16297422 |
T |
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| Q |
107 |
-----taatattaaacaaacttgcaacacgaacgaaattctcacagtgaagaaggtcggtaggtaatgctcatctagaatgcaattcttcccatccacac |
201 |
Q |
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| T |
16297423 |
tgtttgaactttgaacatacttgtaataaaaacaaaattctaaccgtgaagaaggtcggtaagtaatgctcatctggaatgcaattcttcccatccacac |
16297522 |
T |
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| Q |
202 |
tggactgtaacatcaagaat |
221 |
Q |
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| T |
16297523 |
cgggctgcaacgtcaagaat |
16297542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 52959788 - 52959748
Alignment:
| Q |
31 |
gttactgaccattttgcaattccactaggatcgacaatcta |
71 |
Q |
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| T |
52959788 |
gttactgaccagtttgcaattccaccaggatcaacaatcta |
52959748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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