View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_55 (Length: 237)
Name: NF11207_low_55
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 980560 - 980781
Alignment:
| Q |
2 |
aaaattgtagaagtgaatctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattcacaactgtata |
101 |
Q |
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| T |
980560 |
aaaattgtataagtgagtctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattcacaactgtata |
980659 |
T |
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| Q |
102 |
ttttctaggtgccaaggaaaagccaatgtgcagggttgtttgtgaaaacaataacgaatatgtttttaatttacaaagtgtaagtcaaatatatacaata |
201 |
Q |
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| T |
980660 |
ttttctaggtgccagggaaaagccaatgtgcagggttgtttgtgaaaacaacaactaatatgtttttaatttacaatgtgtaagttaaatatatacaata |
980759 |
T |
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| Q |
202 |
tgtaatatcaaacttcagaggt |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
980760 |
tgtaatatcaaacttcagaggt |
980781 |
T |
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Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 27146672 - 27146762
Alignment:
| Q |
1 |
caaaattgtagaagtgaatctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattca |
91 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146672 |
caaaattgtagaagtgagtctagagctctctagttgaacctataaatatttctaggtacttgcataattgcattttgcatcaaacaattca |
27146762 |
T |
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