View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_56 (Length: 232)
Name: NF11207_low_56
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31320296 - 31320514
Alignment:
| Q |
1 |
gttttttctagggcggtgaaatgactggttaaatgagtgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattctt |
100 |
Q |
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| T |
31320296 |
gttttttctagggcggtgaaatgactggttaaatgagtgaatcttttttgcatatctgtaattttctctcc-ggtaacattctaaacattttatattctt |
31320394 |
T |
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| Q |
101 |
gggaaagggtgttgagtccaaatcatttacgtattcggttccctcatgggtggtttctaaagtatcccatatttcttttgtggtcttacaatttaaatcc |
200 |
Q |
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|||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320395 |
gggaaagggtgttgagtctagatcgtttacttattcggttccctcatgggtggtttctaaagtatcccatatttcttttgtggtcttacaatttaaatcc |
31320494 |
T |
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| Q |
201 |
taaggaattgattcatctct |
220 |
Q |
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||||||||| |||||||||| |
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| T |
31320495 |
taaggaattcattcatctct |
31320514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 33303003 - 33302923
Alignment:
| Q |
38 |
tgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattcttgggaaagggtgttgagtc |
118 |
Q |
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| T |
33303003 |
tgaatcttttttgcatatctaggattttctctcctggtaaaattctaaacatttcatattcttgggaaagggtattgagtc |
33302923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 33303738 - 33303658
Alignment:
| Q |
38 |
tgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattcttgggaaagggtgttgagtc |
118 |
Q |
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| T |
33303738 |
tgaatcttttttgcatatctaggattttctctcctggtaaaattctaaacatttcatattcttgggaaagggtattgagtc |
33303658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 22407999 - 22408095
Alignment:
| Q |
1 |
gttttttctagggcggtgaaatgactggttaaatgagtgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatatt |
97 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||| |||| |||||||||| |||||| || |||||||||| |
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| T |
22407999 |
gttttttctaaggcggtgagatgattggttaaatgagtgaatctcttttgcatatctagaattcattctcccggtagcattctaaatatttcatatt |
22408095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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