View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_58 (Length: 225)
Name: NF11207_low_58
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 51620647 - 51620520
Alignment:
| Q |
84 |
aggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttagtggtatgaatattacaacgac |
183 |
Q |
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| T |
51620647 |
aggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattac----ag |
51620552 |
T |
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| Q |
184 |
gtacaatataggaaattcatattttcattcat |
215 |
Q |
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| T |
51620551 |
ggacaatataggaaattcatattttccttcat |
51620520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 2981429 - 2981334
Alignment:
| Q |
84 |
aggttaggtacattatttacctattataaaagttaaaaag-atataaatgattcttataataatttcatacacattttagtggtatgaatattaca |
178 |
Q |
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| T |
2981429 |
aggttaggtacattccttacctattatagtaggtaaaaaggatataaatgattcttataataacttcatctaaattttgatggtatgaatattaca |
2981334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 13431683 - 13431589
Alignment:
| Q |
84 |
aggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttagtggtatgaatattaca |
178 |
Q |
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| T |
13431683 |
aggttaggtacattatttacctattataaaagtaaaaaagatataaatgattcttataataatttcatacacattttaatggtatgaatattaca |
13431589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 6228941 - 6228848
Alignment:
| Q |
84 |
aggttaggtacattatttacctattataaaagttaaaaa-gatataaatgattcttataataatttcatacacattttagtggtatgaatatta |
176 |
Q |
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| T |
6228941 |
aggtttggtacatcagttacctattgtagaaggtaaaaatggtataaataattcttgtaataatttcatttacattttaatggtatgaatatta |
6228848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 6107761 - 6107703
Alignment:
| Q |
118 |
aaaaagatataaatgattcttataataatttcatacacattttagtggtatgaatatta |
176 |
Q |
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| T |
6107761 |
aaaaagatataaataattctgataatagtttcatttacattttaatggtatgaatatta |
6107703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 16494437 - 16494531
Alignment:
| Q |
84 |
aggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttagtggtatgaatattaca |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
16494437 |
aggttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcttacacattttaatggtatgaatattaca |
16494531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 48498228 - 48498351
Alignment:
| Q |
87 |
ttaggtacattatttacctattataaaagttaaaaagatataaatgattcttataataatttcatacacattttagtggtatgaatattacaacgacgta |
186 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | | |
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| T |
48498228 |
ttaggtacattatttacctattataa--gttaaaaagatataagtgattcttataataatttcatacacattttaatggtatgaatattaca---gggga |
48498322 |
T |
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| Q |
187 |
caatataggaaattcatattttcattcat |
215 |
Q |
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|| |||||||||||||||||||| ||||| |
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| T |
48498323 |
cagtataggaaattcatattttccttcat |
48498351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 41701341 - 41701288
Alignment:
| Q |
125 |
tataaatgattcttataataatttcatacacattttagtggtatgaatattaca |
178 |
Q |
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||||||| |||||| |||||||||||| |||||||| |||||||||||||||| |
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| T |
41701341 |
tataaataattcttttaataatttcatttacattttaatggtatgaatattaca |
41701288 |
T |
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