View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11207_low_6 (Length: 577)

Name: NF11207_low_6
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11207_low_6
NF11207_low_6
[»] chr2 (13 HSPs)
chr2 (6-495)||(8368718-8369204)
chr2 (6-425)||(8400276-8400692)
chr2 (6-425)||(8421853-8422269)
chr2 (100-219)||(8394781-8394900)
chr2 (100-219)||(8395024-8395143)
chr2 (100-219)||(8406429-8406548)
chr2 (100-219)||(8412549-8412668)
chr2 (100-219)||(8434647-8434766)
chr2 (100-217)||(8404487-8404604)
chr2 (103-179)||(8375372-8375448)
chr2 (103-179)||(8439655-8439731)
chr2 (155-196)||(8431629-8431670)
chr2 (100-188)||(8417770-8417858)
[»] chr4 (1 HSPs)
chr4 (172-218)||(55331437-55331483)


Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Original strand, 8368718 - 8369204
Alignment:
Q  6 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 105  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368718 agaagctgagaataaaagtgcagaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8368817  T
Q  106 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368818 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8368917  T
Q  206 ttgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcat 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||   |||||||||||||||||||||| ||    
T  8368918 ttgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaagaaggggaatagtacttgggtg---aatgataatcattttcttgaattat 8369014  T
Q  306 tattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttggtcttgtttttggaactatggaaagaaccttagggagtttt 405  Q
    |||||||||||| |||| |||||||||||   |||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  8369015 tattgggattgtgtgtgtaagttggccgt---ttaactcctcaaatagctttctgcttggtcttgtttttggaactatggaaagaactttagggagtttt 8369111  T
Q  406 gggacattgaaagatgatttgattctttctgaagaagaa---gatgatgatgaaattaaagaagaaaatacttgtaaggaagccatattatat 495  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8369112 gggacattgaaagatgatttgattctttctgaagaagaagatgatgatgatgaaattaaagaagaaaatacttgtaaggaagccatattatat 8369204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 8400692 - 8400276
Alignment:
Q  6 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 105  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400692 agaagctgagaataaaagtgctgaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8400593  T
Q  106 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400592 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8400493  T
Q  206 ttgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcat 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400492 ttgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcat 8400393  T
Q  306 tattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttggtcttgtttttggaactatggaaagaaccttagggagtttt 405  Q
    |||||||||||| |||   ||||||||||   |||| ||||||| ||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||    
T  8400392 tattgggattgtgtgtttgagttggccgt---ttaattcctcaattagttttctacttggtcttatatttggagctatggaaagaactttaggaagtttt 8400296  T
Q  406 gggacattgaaagatgattt 425  Q
    ||||||||||||||||||||    
T  8400295 gggacattgaaagatgattt 8400276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 8422269 - 8421853
Alignment:
Q  6 agaagcagagaataaaagtgccgaagataatttgagggctaaaagaggagcgccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 105  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422269 agaagctgagaataaaagtgcggaagataatttgagggctaaaagaggagcaccggagccgcttatggctgatatacctgccatggcggtggcggtgaga 8422170  T
Q  106 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422169 gtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagattcaagaa 8422070  T
Q  206 ttgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcat 305  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422069 ttgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaagaaggagaattgtacttgggtgaataatgataatcattttcttgaatcat 8421970  T
Q  306 tattgggattgtatgtgcaagttggccgtttattaactcctcaaatagttttctacttggtcttgtttttggaactatggaaagaaccttagggagtttt 405  Q
    |||||||||||| |||   ||||| ||||   |||| || ||||| || || || |||||||||||||||||||||||||||||| | ||||||||||||    
T  8421969 tattgggattgtgtgtatgagttgaccgt---ttaattcttcaaacagcttcctgcttggtcttgtttttggaactatggaaagagctttagggagtttt 8421873  T
Q  406 gggacattgaaagatgattt 425  Q
    || ||||||||||| |||||    
T  8421872 ggaacattgaaagaggattt 8421853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 8394900 - 8394781
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8394900 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8394801  T
Q  200 caagaattgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8394800 ccaagactgcatagagttga 8394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 8395143 - 8395024
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8395143 gtgagagtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8395044  T
Q  200 caagaattgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8395043 ccaagactgcatagagttga 8395024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 8406429 - 8406548
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8406429 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8406528  T
Q  200 caagaattgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8406529 ccaagactgcatagagttga 8406548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 8412549 - 8412668
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8412549 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8412648  T
Q  200 caagaattgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8412649 ccaagactgcatagagttga 8412668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 8434647 - 8434766
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8434647 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 8434746  T
Q  200 caagaattgcatagagttga 219  Q
    | |  | |||||||||||||    
T  8434747 ccaagactgcatagagttga 8434766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 8404487 - 8404604
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 199  Q
    ||||| || |||||||||||||||||||||| ||| || |||||||| || |||||||  || | ||||| ||||||||| |||||||| |||||||  |    
T  8404487 gtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaattctgtctgatacagcct 8404586  T
Q  200 caagaattgcatagagtt 217  Q
    |   ||||||||||||||    
T  8404587 ccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 8375448 - 8375372
Alignment:
Q  103 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttc 179  Q
    ||||| ||||||||||||||||| || ||||| || |||||||| |  || ||||||||||||||||||||||||||    
T  8375448 agagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgcatttc 8375372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 8439655 - 8439731
Alignment:
Q  103 agagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttc 179  Q
    ||||| ||||||||||||||||| || ||||| || ||||||||    || ||||||||||||||||||||||||||    
T  8439655 agagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgcatttc 8439731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 8431629 - 8431670
Alignment:
Q  155 gttcgccaatgttttgatgcatttctattctgtcggatacag 196  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  8431629 gttcgccaatgttgtgatgcatttctattctgtctgatacag 8431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 8417770 - 8417858
Alignment:
Q  100 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtc 188  Q
    |||||||| |||||||||||||| || || ||||| || |||||||| |  ||| |||| | |||||| ||||||||||| ||||||||    
T  8417770 gtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgcatttcaattctgtc 8417858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 55331437 - 55331483
Alignment:
Q  172 tgcatttctattctgtcggatacagattcaagaattgcatagagttg 218  Q
    |||||||| ||||||||||||||||| || | |||||||||||||||    
T  55331437 tgcatttcgattctgtcggatacagaatctaaaattgcatagagttg 55331483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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