View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_60 (Length: 221)
Name: NF11207_low_60
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47986988 - 47987208
Alignment:
| Q |
1 |
tccataagccagtatacaaattaacatttataactaacttctttaactgtcactaactaccattgagttactgctacaacacaacattggttaattggta |
100 |
Q |
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| T |
47986988 |
tccataagccagtatacaaattaacatttataactaacttctttaactgtcactaactaccattgagttactgctacaacacaacattggttaattggta |
47987087 |
T |
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| Q |
101 |
gagtggaagtgggcgctggtaaaaagattttcatttgccatttctcaatttacacatactaactggaaaaagattttcaatatgatcaaatgtagagaat |
200 |
Q |
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| T |
47987088 |
gagtggaagtgggcgctggtaaaaagattttcatttgccatttctcaatttacacatactaactggaaaaagattttcaatatgatcaaatgtagagaat |
47987187 |
T |
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| Q |
201 |
aaaacaacaactaactttcat |
221 |
Q |
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| T |
47987188 |
aaaacagcaactaactttcat |
47987208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 41647632 - 41647523
Alignment:
| Q |
7 |
agccagtatacaaattaacatttataactaacttctttaactgtcactaactaccattgagttactgctacaacacaacattggttaattggtagagtgg |
106 |
Q |
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| T |
41647632 |
agccagtatacatat-aacattcataactaacttctttaactgtcactaactacca--gagttacagttacaacacaacattgg----ttggtagagtgg |
41647540 |
T |
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| Q |
107 |
aagtgggcgctggtaaa |
123 |
Q |
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| T |
41647539 |
aagtgggctctggtaaa |
41647523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 41647418 - 41647355
Alignment:
| Q |
153 |
cacatactaactggaaaaagattttcaatatgatcaaatgtagagaataaaacaacaactaact |
216 |
Q |
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| T |
41647418 |
cacatactaattggagaaagatttgcaatatgatcaaatgtagggaagaaaacagcaactaact |
41647355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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