View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_61 (Length: 207)
Name: NF11207_low_61
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 3904196 - 3904319
Alignment:
| Q |
18 |
taaactacgtaagattagtaatctagttctaaaaatctataaaacccaacaatttgacctctaacatcttaataatacgaattgaatcgacataatttgt |
117 |
Q |
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| T |
3904196 |
taaactacgtaagattagtaatctagttctaaaaatctataaaacccaacaatttgacctctaacatcttaataatacgaattgaatcgacataatttgt |
3904295 |
T |
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| Q |
118 |
atacattgataactatttgtaata |
141 |
Q |
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| T |
3904296 |
atacattgataactatttgtaata |
3904319 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 3904317 - 3904363
Alignment:
| Q |
161 |
atatttactaaattaaaatgaggtattcccgtgagcttagctcagtt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3904317 |
atatttactaaattaaaatgaggtattcccgtgagcttagctcagtt |
3904363 |
T |
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