View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_7 (Length: 576)
Name: NF11207_low_7
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 23 - 462
Target Start/End: Original strand, 5573652 - 5574103
Alignment:
| Q |
23 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagctacataatccagatgataattaaggaacaaacgaagaacaaacaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |
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| T |
5573652 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagctacagaatccagatgataattaaggaaccaaccaagaacaaacaa |
5573751 |
T |
|
| Q |
123 |
gttgaagacataaatattaatgatgggaccactcaatttnnnnnnngaaaatattggttttttgcaag---ttacattattaaaagctaatttactctac |
219 |
Q |
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| T |
5573752 |
gttgaagacataaatattaatgatgggaccactcaattttaaaaaagaaaatattggttttttgcaagttattacattattaaaagctaatttactctac |
5573851 |
T |
|
| Q |
220 |
acactacaaagtatcatgtgtggcatgccaacgaactataaaaactaatttcttcatattgaagcaataaactaaaacataaaatta---tataaactaa |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5573852 |
acactacaaagtatcatgtgtggcatgccatcgaactataaaaactaatttcttcatattgaagcaataaactaaaacataaaattatactataaactaa |
5573951 |
T |
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| Q |
317 |
gaaactcgccttagtcaaattaagggtgccacaactattcc------ttagcgagcaataatatattcaccacaaactcaaagcttcttgaaatgttctt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573952 |
gaaactcgccttagtcaaattaagggtgccacaactattccttagcgttagcgagcaataatatattcaccacaaactcaaagcttcttgaaatgttctt |
5574051 |
T |
|
| Q |
411 |
aagaagatggaaagagtttgaaaaaactatatactaactacttcatatatat |
462 |
Q |
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| T |
5574052 |
aagaagatggaaagagtttgaaaaaactatatactaactacttcatatatat |
5574103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 456 - 560
Target Start/End: Original strand, 5574254 - 5574358
Alignment:
| Q |
456 |
tatatatcttaagaaagaaacgttatcaacatgttgaaataatactaccggaaaaattgcaatcgcgggccccacttttctgttctgtagtgaatggtag |
555 |
Q |
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| T |
5574254 |
tatatatcttaagaaagacacgttatcaacatgttgaaataatactaccggaaaaattgcaatcgcgggccccacttttctgttctgtagtgaatggtag |
5574353 |
T |
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| Q |
556 |
aaaag |
560 |
Q |
| |
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||||| |
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| T |
5574354 |
aaaag |
5574358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 5582911 - 5583022
Alignment:
| Q |
7 |
agagatgaataggtaacaccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagctacataatccagatgataattaaggaaca |
106 |
Q |
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| T |
5582911 |
agagaagaataggaaacaccaaccatgtctttattatagaatccatctctaagaagaaaatctaatgaagctaataaatccagataataattaaggaacc |
5583010 |
T |
|
| Q |
107 |
aacgaagaacaa |
118 |
Q |
| |
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||| |||||||| |
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| T |
5583011 |
aaccaagaacaa |
5583022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 253 - 390
Target Start/End: Original strand, 5583107 - 5583242
Alignment:
| Q |
253 |
aactataaaaactaatttcttcatattgaagcaataaactaaaacataaaattatataaactaagaaactcgccttagtcaaattaagggtgccacaact |
352 |
Q |
| |
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|||||||||| |||||||||||| |||||| ||||| |||| ||||||||| ||||||||||||| || |||| ||||||||||||||||||||| |
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| T |
5583107 |
aactataaaagctaatttcttcaaattgaattaataacttaaatcataaaatttgataaactaagaaaatcacctttgtcaaattaagggtgccacaa-- |
5583204 |
T |
|
| Q |
353 |
attccttagcgagcaataatatattcaccacaaactca |
390 |
Q |
| |
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||||| |||| || ||||||||| ||||| |||||||| |
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| T |
5583205 |
attccgtagcaagtaataatataatcacctcaaactca |
5583242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 12051707 - 12051652
Alignment:
| Q |
23 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagct |
78 |
Q |
| |
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|||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||| |
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|
| T |
12051707 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatctaatgaagct |
12051652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 12064591 - 12064535
Alignment:
| Q |
23 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagcta |
79 |
Q |
| |
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|||||||||||| ||||| ||||||||| |||||||||||||| | ||||||||||| |
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| T |
12064591 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaagcta |
12064535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5593403 - 5593461
Alignment:
| Q |
7 |
agagatgaataggtaacaccaaccatgttttgattatagattccatctctaagaagaaa |
65 |
Q |
| |
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||||| ||||||| ||||||||||||| || || |||||||||||||||||||||||| |
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|
| T |
5593403 |
agagaagaataggaaacaccaaccatggctttatcatagattccatctctaagaagaaa |
5593461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 12059139 - 12059087
Alignment:
| Q |
23 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaa |
75 |
Q |
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|||||||||||| ||||| ||||||||| |||||||||||||| | ||||||| |
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| T |
12059139 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaa |
12059087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 5577257 - 5577316
Alignment:
| Q |
392 |
agcttcttgaaatgttc-ttaagaagatggaaagagtttgaaaaaact-atatactaact |
449 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||||||||| |
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| T |
5577257 |
agcttcttgaaatgttctttaataagatggaaagagtttgcaaagactaatatactaact |
5577316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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