View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11207_low_8 (Length: 565)
Name: NF11207_low_8
Description: NF11207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11207_low_8 |
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| [»] scaffold0240 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Complemental strand, 13858798 - 13858295
Alignment:
| Q |
19 |
ttaattacatgttggcttcttcattgattaatgatacacaacttaaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13858798 |
ttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtc |
13858699 |
T |
|
| Q |
119 |
tattttgtgtctcaattaatatagcctctatgatgtgttgttgtgtgtggagtgcagagaattattatgcagtagcttggttttgatatgatttcatgtg |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13858698 |
tattttgtgtctcaattagtatagcctctatgatgtgttgt---gtgtggagtgcagagaattattatgcagtagtttggttttgatatgatttcatgtg |
13858602 |
T |
|
| Q |
219 |
ataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatatggttgtaaggtaagtgaattttgtagcttcatgctttactgca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13858601 |
ataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaagtgaattttgtagcttcatgcttttctgca |
13858502 |
T |
|
| Q |
319 |
gaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaaattaaatagtagctggctttatgcgacaacaactttttga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
13858501 |
gaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatag-aattacatagtagctggctttatgtgacaacaactttttga |
13858403 |
T |
|
| Q |
419 |
gtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctgagctgattgtataacttgtaagtattatgtataacaatctg |
518 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13858402 |
gtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctgagctgattgtataacttgtatgtattatgtataacaatctg |
13858303 |
T |
|
| Q |
519 |
aaacttgt |
526 |
Q |
| |
|
|||||||| |
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|
| T |
13858302 |
aaacttgt |
13858295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 144 - 558
Target Start/End: Original strand, 40141767 - 40142180
Alignment:
| Q |
144 |
ctctatgatgtgttgttgtgtgtggagtgcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
243 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40141767 |
ctctatgatgtgttgttgtgtgtggag--cagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
40141864 |
T |
|
| Q |
244 |
taaattgatacctagttactgatatgtgatatggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataa |
343 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40141865 |
taaattgatacctatttactgatatgtgatctggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataa |
40141964 |
T |
|
| Q |
344 |
tccgtagatatgaattttctgagtatcatatagaaattaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgacct |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40141965 |
tccgtagatatgaattttctgagtatcatatagaaattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaacct |
40142064 |
T |
|
| Q |
444 |
tagatgatttataattcctgcaaaattaactctgagctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag- |
542 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40142065 |
tagatgatttataattcctgcaaatttaactctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttggtaaatgagt |
40142164 |
T |
|
| Q |
543 |
taatcagcctatgctt |
558 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40142165 |
taatcagcctatgctt |
40142180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 35258690 - 35258642
Alignment:
| Q |
190 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
35258690 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctctt |
35258642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 190 - 558
Target Start/End: Original strand, 32028914 - 32029276
Alignment:
| Q |
190 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatatggttgtaaggtaag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
32028914 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaag |
32029013 |
T |
|
| Q |
290 |
tgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaaattaaatagta |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
32029014 |
tgaattttgtagcttcat------ctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatata-aaattacatagta |
32029106 |
T |
|
| Q |
390 |
gctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctgagctgattgtat |
489 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32029107 |
gctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactctgagctgattgtat |
32029206 |
T |
|
| Q |
490 |
aacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgctt |
558 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32029207 |
aatgtatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgctt |
32029276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 32028403 - 32028571
Alignment:
| Q |
21 |
aattacatgttggcttcttcattgattaatgatacacaacttaaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtcta |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32028403 |
aattacatgttggcttcttcattgagtaatgatacacaacttgaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtcta |
32028502 |
T |
|
| Q |
121 |
ttttgtgtctcaattaatatagcctctatgatgtgttgttgtgtgtggagtgcagagaattattatgca |
189 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32028503 |
ttttgtgtctcaattagtatagcctctatgatgtgttgttgtgtgtggagtgcagagagttattatgca |
32028571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 279 - 558
Target Start/End: Complemental strand, 9540514 - 9540235
Alignment:
| Q |
279 |
tgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaa |
378 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9540514 |
tgtaaggtaagtgaagcttgtagcttcatgcttttctgcagaaggtagttgatctcaagggataatccgtagatatgaattttctgagtatcatata-aa |
9540416 |
T |
|
| Q |
379 |
attaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctga |
478 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9540415 |
attacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactttga |
9540316 |
T |
|
| Q |
479 |
gctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgctt |
558 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
9540315 |
gctgattgtataacttatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttcatcagcctatgctt |
9540235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 26052903 - 26052977
Alignment:
| Q |
19 |
ttaattacatgttggcttcttcattgattaatgatacacaacttaaaacttagatggttcataatatgtataaca |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
26052903 |
ttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttggatggttcataatatgtataaca |
26052977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 26053240 - 26053296
Alignment:
| Q |
190 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaa |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26053240 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctcttggcagtaa |
26053296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 29089010 - 29089121
Alignment:
| Q |
19 |
ttaattacatgttggcttcttcattgattaatgatacacaacttaaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29089010 |
ttaattacatgttggcttcatcattgattaatgatacacaacttgaaacttagatggttcataatatgtataacaattctagcttggtctaggtctagtc |
29089109 |
T |
|
| Q |
119 |
tattttgtgtct |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29089110 |
tattttgtgtct |
29089121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 8635802 - 8635843
Alignment:
| Q |
190 |
gtagcttggttttgatatgatttcatgtgataagccatactt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8635802 |
gtagcttggttttgatatgatttcatgtgataaaccatactt |
8635843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 32671211 - 32671173
Alignment:
| Q |
151 |
atgtgttgttgtgtgtggagtgcagagaattattatgca |
189 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
32671211 |
atgtgttgttgtgtgtggaatgcagagagttattatgca |
32671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 10579 - 10546
Alignment:
| Q |
156 |
ttgttgtgtgtggagtgcagagaattattatgca |
189 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
10579 |
ttgttgtgtgtggagtgcagagagttattatgca |
10546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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